Difference between revisions of "TSS:Hg 11860.1"
From referenceTSS
| Line 8: | Line 8: | ||
|distance_to_tss=498 | |distance_to_tss=498 | ||
|end=39576360 | |end=39576360 | ||
| + | |end_of_center_position=39576351 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=APP-1 | + | |gene_alias=APP-1 |
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
|gene_id=8761 | |gene_id=8761 | ||
| Line 27: | Line 28: | ||
|species=human | |species=human | ||
|start=39576341 | |start=39576341 | ||
| + | |start_of_center_position=39576350 | ||
|strand=- | |strand=- | ||
|tata_box="48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" | |tata_box="48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" | ||
Revision as of 22:56, 10 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 39576350 |
|---|---|
| End of the center position in the TSS region: | 39576351 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000372858.7 uc001cdl.3 BC029969 |
|---|---|
| Distance: | -41 |
| Num_trans: | 21 |
| All_trans: | ENST00000372858.7:-41 uc001cdl.3:-41 BC029969:-41 ENST00000372862.7:89 uc057fbl.1:89 U33818:355 ENST00000372857.7:-384 uc010oiv.2:-384 U75686:-384 ENST00000372856.7:-391 uc001cdm.3:-391 BC065540:-391 BC071591:-425 ENST00000531243.2:-427 uc057fcd.1:-427 ENST00000451091.2:-430 uc057fcc.1:-430 BC094755:-430 NM_001135654:-489 NM_001135653:-489 NM_003819:-489 |
TATA-Box annotation
| Distance to TSS: | 498 |
|---|---|
| Nearest PromoterID: | NM_001135654 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | "poly(A) binding protein, cytoplasmic 4 (inducible form)" |
| Gene Alias: | APP-1 |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00)" |
