Difference between revisions of "TSS:Hg 125894.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB463728:0 KJ891371:0 CU677924:0 U00947:-5 BC012158:-18 X79536:-23 ENST00000547276.5:-25 uc001sfn.4:-25 BC020442:-25 BC103707:-25 BC052296:-27 ENST00000...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ALS20= | ||
| + | |HNRPA1= | ||
| + | |HNRPA1L3= | ||
| + | |IBMPFD3= | ||
| + | |UP 1= | ||
|all_trans=AB463728:0 KJ891371:0 CU677924:0 U00947:-5 BC012158:-18 X79536:-23 ENST00000547276.5:-25 uc001sfn.4:-25 BC020442:-25 BC103707:-25 BC052296:-27 ENST00000330752.12:-30 uc058ovr.1:-30 BC002355:-36 BC033714:-36 BC074502:-39 BC121133:-41 BC073162:-41 ENST00000551702.5:-42 uc058ovq.1:-42 BC078165:-42 BC071945:-47 ENST00000340913.10:-50 uc001sfl.4:-50 AK291113:-55 ENST00000547870.1:-56 uc058ovp.1:-56 ENST00000547708.5:-57 ENST00000547566.5:-57 uc058ovn.1:-57 uc058ovo.1:-57 AK303303:-57 AK308679:-57 AK129814:-57 X06747:-57 BC070315:-57 AK298176:-58 BC009600:-58 NM_031157:-115 NR_135167:-115 NM_002136:-115 ENST00000548688.5:141 uc058ovs.1:141 ENST00000550994.1:321 uc058ovt.1:321 | |all_trans=AB463728:0 KJ891371:0 CU677924:0 U00947:-5 BC012158:-18 X79536:-23 ENST00000547276.5:-25 uc001sfn.4:-25 BC020442:-25 BC103707:-25 BC052296:-27 ENST00000330752.12:-30 uc058ovr.1:-30 BC002355:-36 BC033714:-36 BC074502:-39 BC121133:-41 BC073162:-41 ENST00000551702.5:-42 uc058ovq.1:-42 BC078165:-42 BC071945:-47 ENST00000340913.10:-50 uc001sfl.4:-50 AK291113:-55 ENST00000547870.1:-56 uc058ovp.1:-56 ENST00000547708.5:-57 ENST00000547566.5:-57 uc058ovn.1:-57 uc058ovo.1:-57 AK303303:-57 AK308679:-57 AK129814:-57 X06747:-57 BC070315:-57 AK298176:-58 BC009600:-58 NM_031157:-115 NR_135167:-115 NM_002136:-115 ENST00000548688.5:141 uc058ovs.1:141 ENST00000550994.1:321 uc058ovt.1:321 | ||
|chr=chr12 | |chr=chr12 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=145 | |distance_to_tss=145 | ||
|end=54280865 | |end=54280865 | ||
| + | |end_of_center_position=54280835 | ||
|entrez_id=3178 | |entrez_id=3178 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=ALS19 | + | |gene_alias=ALS19 |
|gene_description=heterogeneous nuclear ribonucleoprotein A1 | |gene_description=heterogeneous nuclear ribonucleoprotein A1 | ||
|gene_id=3178 | |gene_id=3178 | ||
| Line 17: | Line 23: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5031 | |hgnc_mgi_id=HGNC:5031 | ||
| + | |hnRNP A1= | ||
| + | |hnRNP-A1= | ||
|nearest_ensembl=ENSG00000135486 | |nearest_ensembl=ENSG00000135486 | ||
|nearest_promoter_id=NM_002136 | |nearest_promoter_id=NM_002136 | ||
| Line 24: | Line 32: | ||
|species=human | |species=human | ||
|start=54280804 | |start=54280804 | ||
| + | |start_of_center_position=54280834 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AB463728 KJ891371 CU677924 | |transcript_name=AB463728 KJ891371 CU677924 | ||
Revision as of 08:37, 13 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 54280834 |
|---|---|
| End of the center position in the TSS region: | 54280835 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB463728 KJ891371 CU677924 |
|---|---|
| Distance: | 0 |
| Num_trans: | 45 |
| All_trans: | AB463728:0 KJ891371:0 CU677924:0 U00947:-5 BC012158:-18 X79536:-23 ENST00000547276.5:-25 uc001sfn.4:-25 BC020442:-25 BC103707:-25 BC052296:-27 ENST00000330752.12:-30 uc058ovr.1:-30 BC002355:-36 BC033714:-36 BC074502:-39 BC121133:-41 BC073162:-41 ENST00000551702.5:-42 uc058ovq.1:-42 BC078165:-42 BC071945:-47 ENST00000340913.10:-50 uc001sfl.4:-50 AK291113:-55 ENST00000547870.1:-56 uc058ovp.1:-56 ENST00000547708.5:-57 ENST00000547566.5:-57 uc058ovn.1:-57 uc058ovo.1:-57 AK303303:-57 AK308679:-57 AK129814:-57 X06747:-57 BC070315:-57 AK298176:-58 BC009600:-58 NM_031157:-115 NR_135167:-115 NM_002136:-115 ENST00000548688.5:141 uc058ovs.1:141 ENST00000550994.1:321 uc058ovt.1:321 |
TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_002136 |
| Entrez ID: | 3178 |
| Nearest Unigene: | Hs.546261 |
| Nearest Refseq: | NM_002136 |
| Nearest Ensembl: | ENSG00000135486 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Alias: | ALS19 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
