Difference between revisions of "TSS:Hg 100271.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=67 |entrez_id=1030 |gc_percent=0.666667 |gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b |gene_description=cyclin dependent kinas...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |INK4B= | ||
| + | |MTS2= | ||
| + | |P15= | ||
| + | |TP15= | ||
| + | |all_trans=ENST00000380142.4:-23 uc003zpn.4:-23 AF004819:-23 U17075:-23 L36844:-30 BC014469:-32 NM_004936:-64 NM_078487:-64 ENST00000276925.6:-114 uc003zpo.4:-114 JQ694046:142 JQ694047:142 JQ694048:142 JX391994:266 AM393264:290 AM393391:290 CR536529:290 AM392641:290 AM392962:290 AB462998:290 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-23 | ||
|distance_to_tss=67 | |distance_to_tss=67 | ||
| + | |end=22009249 | ||
|entrez_id=1030 | |entrez_id=1030 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b | |gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b | ||
|gene_description=cyclin dependent kinase inhibitor 2B | |gene_description=cyclin dependent kinase inhibitor 2B | ||
| − | |gene_name=CDKN2B | + | |gene_id=1030 |
| + | |gene_name=cyclin-dependent kinase inhibitor 2B | ||
| + | |gene_source=HGNC:1788 | ||
| + | |gene_symbol=CDKN2B | ||
| + | |gene_synonyms=CDK4I INK4B MTS2 P15 TP15 p15INK4b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1788 | ||
|nearest_ensembl=ENSG00000147883 | |nearest_ensembl=ENSG00000147883 | ||
|nearest_promoter_id=NM_004936 | |nearest_promoter_id=NM_004936 | ||
|nearest_refseq=NM_004936 | |nearest_refseq=NM_004936 | ||
|nearest_unigene=Hs.72901 | |nearest_unigene=Hs.72901 | ||
| + | |num_trans=20 | ||
| + | |p15INK4b= | ||
| + | |species=human | ||
| + | |start=22009242 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380142.4 uc003zpn.4 AF004819 U17075 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100271.1 | |tss_id=hg_100271.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P42772 | ||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380142.4 uc003zpn.4 AF004819 U17075 |
|---|---|
| Distance: | -23 |
| Num_trans: | 20 |
| All_trans: | ENST00000380142.4:-23 uc003zpn.4:-23 AF004819:-23 U17075:-23 L36844:-30 BC014469:-32 NM_004936:-64 NM_078487:-64 ENST00000276925.6:-114 uc003zpo.4:-114 JQ694046:142 JQ694047:142 JQ694048:142 JX391994:266 AM393264:290 AM393391:290 CR536529:290 AM392641:290 AM392962:290 AB462998:290 |
TATA-Box annotation
| Distance to TSS: | 67 |
|---|---|
| Nearest PromoterID: | NM_004936 |
| Entrez ID: | 1030 |
| Nearest Unigene: | Hs.72901 |
| Nearest Refseq: | NM_004936 |
| Nearest Ensembl: | ENSG00000147883 |
| Gene Name: | cyclin-dependent kinase inhibitor 2B |
| Gene Alias: | CDK4I |
| Gene Description: | cyclin dependent kinase inhibitor 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
