Difference between revisions of "TSS:Hg 100315.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=400 |entrez_id=79886 |gc_percent=0.696517 |gene_alias=C9orf82|CAAP |gene_description=caspase activity and apoptosis inhibitor 1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAAP= | ||
| + | |all_trans=ENST00000625311.1:0 uc003zqb.4:0 AK300739:0 AK301673:29 ENST00000495958.5:-149 uc064slp.1:-149 HQ447530:-261 AB590748:-261 CU687198:-261 BC071953:-272 ENST00000483493.6:-332 uc064slo.1:-332 AK023719:-347 ENST00000520187.1:-348 uc064sln.1:-348 ENST00000333916.7:-349 uc003zqc.4:-349 BC014658:-349 NM_001167575:-373 NM_024828:-373 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=400 | |distance_to_tss=400 | ||
| + | |end=26892455 | ||
|entrez_id=79886 | |entrez_id=79886 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=C9orf82|CAAP | |gene_alias=C9orf82|CAAP | ||
|gene_description=caspase activity and apoptosis inhibitor 1 | |gene_description=caspase activity and apoptosis inhibitor 1 | ||
| − | |gene_name=CAAP1 | + | |gene_id=79886 |
| + | |gene_name=caspase activity and apoptosis inhibitor 1 | ||
| + | |gene_source=HGNC:25834 | ||
| + | |gene_symbol=CAAP1 | ||
| + | |gene_synonyms=CAAP FLJ13657 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25834 | ||
|nearest_ensembl=ENSG00000120159 | |nearest_ensembl=ENSG00000120159 | ||
|nearest_promoter_id=NM_001167575 | |nearest_promoter_id=NM_001167575 | ||
|nearest_refseq=NM_024828 | |nearest_refseq=NM_024828 | ||
|nearest_unigene=Hs.178357 | |nearest_unigene=Hs.178357 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=26892400 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000625311.1 uc003zqb.4 AK300739 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100315.1 | |tss_id=hg_100315.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DUP7 Q9H8G2 | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000625311.1 uc003zqb.4 AK300739 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000625311.1:0 uc003zqb.4:0 AK300739:0 AK301673:29 ENST00000495958.5:-149 uc064slp.1:-149 HQ447530:-261 AB590748:-261 CU687198:-261 BC071953:-272 ENST00000483493.6:-332 uc064slo.1:-332 AK023719:-347 ENST00000520187.1:-348 uc064sln.1:-348 ENST00000333916.7:-349 uc003zqc.4:-349 BC014658:-349 NM_001167575:-373 NM_024828:-373 |
TATA-Box annotation
| Distance to TSS: | 400 |
|---|---|
| Nearest PromoterID: | NM_001167575 |
| Entrez ID: | 79886 |
| Nearest Unigene: | Hs.178357 |
| Nearest Refseq: | NM_024828 |
| Nearest Ensembl: | ENSG00000120159 |
| Gene Name: | caspase activity and apoptosis inhibitor 1 |
| Gene Alias: | C9orf82 |
| Gene Description: | caspase activity and apoptosis inhibitor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
