Difference between revisions of "TSS:Hg 10541.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=-3 |entrez_id=6060 |gc_percent=0.577114 |gene_alias=HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSD5= | ||
| + | |HSD6= | ||
| + | |HSD7= | ||
| + | |RNU1= | ||
| + | |RNU1D2= | ||
| + | |RNU1E2= | ||
| + | |RNU1F1= | ||
| + | |RNU1G1= | ||
| + | |RNU1G2= | ||
| + | |U1B2= | ||
| + | |U1D2= | ||
| + | |U1E2= | ||
| + | |U1F= | ||
| + | |all_trans=ENST00000383925.1:3 NR_004400:3 NR_004430:3 NR_004427:3 NR_004421:3 NR_004408:3 uc031tqt.1:3 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=3 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
| + | |end=16514289 | ||
|entrez_id=6060 | |entrez_id=6060 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F | |gene_alias=HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F | ||
|gene_description="RNA, U1 small nuclear 4" | |gene_description="RNA, U1 small nuclear 4" | ||
| − | |gene_name=RNU1-4 | + | |gene_id=26863 26869 26870 26871 6060 |
| + | |gene_name="RNA, U1 small nuclear 1; RNA, U1 small nuclear 2; RNA, U1 small nuclear 3; RNA, U1 small nuclear 4; RNA, variant U1 small nuclear 18" | ||
| + | |gene_source=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | ||
| + | |gene_symbol=RNU1-1 RNU1-2 RNU1-3 RNU1-4 RNVU1-18 | ||
| + | |gene_synonyms=HSD1 HSD2 HSD4 HSD5 HSD6 HSD7 HU1-1 Rnu1a1 U1 U1.15 U1A1 U1B2 U1C1 U1C21 U1D2 U1E2 U1F U1P101 U1P15 vU1.18 | ||
|gene_type=snRNA | |gene_type=snRNA | ||
| + | |hgnc_mgi_id=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | ||
|nearest_ensembl=ENSG00000207389 | |nearest_ensembl=ENSG00000207389 | ||
|nearest_promoter_id=NR_004421 | |nearest_promoter_id=NR_004421 | ||
|nearest_refseq=NR_004421 | |nearest_refseq=NR_004421 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=16514287 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000383925.1 NR_004400 NR_004430 NR_004427 NR_004421 NR_004408 uc031tqt.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_10541.1 | |tss_id=hg_10541.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:34, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000383925.1 NR_004400 NR_004430 NR_004427 NR_004421 NR_004408 uc031tqt.1 |
|---|---|
| Distance: | 3 |
| Num_trans: | 7 |
| All_trans: | ENST00000383925.1:3 NR_004400:3 NR_004430:3 NR_004427:3 NR_004421:3 NR_004408:3 uc031tqt.1:3 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_004421 |
| Entrez ID: | 6060 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_004421 |
| Nearest Ensembl: | ENSG00000207389 |
| Gene Name: | "RNA, U1 small nuclear 1; RNA, U1 small nuclear 2; RNA, U1 small nuclear 3; RNA, U1 small nuclear 4; RNA, variant U1 small nuclear 18" |
| Gene Alias: | HSD2 |
| Gene Description: | "RNA, U1 small nuclear 4" |
| Gene Type: | snRNA |
| CpG%: | 0.055 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
