Difference between revisions of "TSS:Hg 134538.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000489647.4:0 ENST00000630983.1:0 ENST00000465887.2:0 uc058wbo.1:0 uc058wbp.1:0 uc058wbq.1:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |POLR1C= | ||
| + | |RPA16= | ||
| + | |RPA9= | ||
| + | |RPAC2= | ||
| + | |RPC16= | ||
| + | |RPO1-3= | ||
| + | |TCS2= | ||
|all_trans=ENST00000489647.4:0 ENST00000630983.1:0 ENST00000465887.2:0 uc058wbo.1:0 uc058wbp.1:0 uc058wbq.1:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000399696.3:41 uc058wbr.1:41 AB464657:71 CU677257:71 AB527907:71 HQ448674:71 KJ893804:71 KJ898819:71 ENST00000399697.7:-73 NM_015972:-73 NM_152705:-73 uc001urp.4:-73 ENST00000302979.4:-430 uc001uro.4:-430 | |all_trans=ENST00000489647.4:0 ENST00000630983.1:0 ENST00000465887.2:0 uc058wbo.1:0 uc058wbp.1:0 uc058wbq.1:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000399696.3:41 uc058wbr.1:41 AB464657:71 CU677257:71 AB527907:71 HQ448674:71 KJ893804:71 KJ898819:71 ENST00000399697.7:-73 NM_015972:-73 NM_152705:-73 uc001urp.4:-73 ENST00000302979.4:-430 uc001uro.4:-430 | ||
|chr=chr13 | |chr=chr13 | ||
| Line 6: | Line 13: | ||
|distance_to_tss=103 | |distance_to_tss=103 | ||
|end=27621913 | |end=27621913 | ||
| + | |end_of_center_position=27621883 | ||
|entrez_id=51082 | |entrez_id=51082 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=AC19 | + | |gene_alias=AC19 |
|gene_description=RNA polymerase I subunit D | |gene_description=RNA polymerase I subunit D | ||
|gene_id=51082 | |gene_id=51082 | ||
| Line 24: | Line 32: | ||
|species=human | |species=human | ||
|start=27621851 | |start=27621851 | ||
| + | |start_of_center_position=27621882 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000489647.4 ENST00000630983.1 ENST00000465887.2 uc058wbo.1 uc058wbp.1 uc058wbq.1 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623 | |transcript_name=ENST00000489647.4 ENST00000630983.1 ENST00000465887.2 uc058wbo.1 uc058wbp.1 uc058wbq.1 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623 | ||
Revision as of 16:59, 13 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27621882 |
|---|---|
| End of the center position in the TSS region: | 27621883 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000489647.4 ENST00000630983.1 ENST00000465887.2 uc058wbo.1 uc058wbp.1 uc058wbq.1 BC018528 BC015319 BC000889 BC006972 BC054519 AF077044 AK311833 AK097973 AK000623 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000489647.4:0 ENST00000630983.1:0 ENST00000465887.2:0 uc058wbo.1:0 uc058wbp.1:0 uc058wbq.1:0 BC018528:0 BC015319:0 BC000889:0 BC006972:0 BC054519:0 AF077044:0 AK311833:0 AK097973:0 AK000623:0 ENST00000399696.3:41 uc058wbr.1:41 AB464657:71 CU677257:71 AB527907:71 HQ448674:71 KJ893804:71 KJ898819:71 ENST00000399697.7:-73 NM_015972:-73 NM_152705:-73 uc001urp.4:-73 ENST00000302979.4:-430 uc001uro.4:-430 |
TATA-Box annotation
| Distance to TSS: | 103 |
|---|---|
| Nearest PromoterID: | NM_015972 |
| Entrez ID: | 51082 |
| Nearest Unigene: | Hs.507584 |
| Nearest Refseq: | NM_015972 |
| Nearest Ensembl: | ENSG00000186184 |
| Gene Name: | polymerase (RNA) I subunit D |
| Gene Alias: | AC19 |
| Gene Description: | RNA polymerase I subunit D |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
