Difference between revisions of "TSS:Hg 10565.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=44 |entrez_id=23400 |gc_percent=0.810945 |gene_alias=CLN12|HSA9947|KRPPD|PARK9 |gene_description=ATPase 13A2 |gene_name=ATP13A2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSA9947= | ||
| + | |KRPPD= | ||
| + | |PARK9= | ||
| + | |all_trans=ENST00000341676.9:0 ENST00000452699.5:0 ENST00000617114.4:0 uc001bac.3:0 uc001bab.2:0 uc057ctj.1:0 BC030267:0 AK290210:0 NM_001141974:-7 NM_001141973:-7 NM_022089:-7 AY461712:108 ENST00000326735.12:120 uc001baa.3:120 AL354615:120 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
| + | |end=17011965 | ||
|entrez_id=23400 | |entrez_id=23400 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
|gene_alias=CLN12|HSA9947|KRPPD|PARK9 | |gene_alias=CLN12|HSA9947|KRPPD|PARK9 | ||
|gene_description=ATPase 13A2 | |gene_description=ATPase 13A2 | ||
| − | |gene_name=ATP13A2 | + | |gene_id=23400 |
| + | |gene_name=ATPase 13A2 | ||
| + | |gene_source=HGNC:30213 | ||
| + | |gene_symbol=ATP13A2 | ||
| + | |gene_synonyms=CLN12 HSA9947 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30213 | ||
|nearest_ensembl=ENSG00000159363 | |nearest_ensembl=ENSG00000159363 | ||
|nearest_promoter_id=NM_022089 | |nearest_promoter_id=NM_022089 | ||
|nearest_refseq=NM_022089 | |nearest_refseq=NM_022089 | ||
|nearest_unigene=Hs.128866 | |nearest_unigene=Hs.128866 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=17011891 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000341676.9 ENST00000452699.5 ENST00000617114.4 uc001bac.3 uc001bab.2 uc057ctj.1 BC030267 AK290210 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10565.1 | |tss_id=hg_10565.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WUM9 Q9NQ11 | ||
}} | }} | ||
Revision as of 21:44, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000341676.9 ENST00000452699.5 ENST00000617114.4 uc001bac.3 uc001bab.2 uc057ctj.1 BC030267 AK290210 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000341676.9:0 ENST00000452699.5:0 ENST00000617114.4:0 uc001bac.3:0 uc001bab.2:0 uc057ctj.1:0 BC030267:0 AK290210:0 NM_001141974:-7 NM_001141973:-7 NM_022089:-7 AY461712:108 ENST00000326735.12:120 uc001baa.3:120 AL354615:120 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_022089 |
| Entrez ID: | 23400 |
| Nearest Unigene: | Hs.128866 |
| Nearest Refseq: | NM_022089 |
| Nearest Ensembl: | ENSG00000159363 |
| Gene Name: | ATPase 13A2 |
| Gene Alias: | CLN12 |
| Gene Description: | ATPase 13A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
