Difference between revisions of "TSS:Hg 622.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans=ENST00000251546.8:0 | + | |all_trans=ENST00000251546.8:0 AK055344:0 NM_001304791:28 NM_183412:28 ENST00000425796.5:478 ENST00000376770.5:478 NR_130909:478 NM_001304790:478 NM_001330355:478 NM_001014765:478 NM_183413:478 CR749368:490 ENST00000251547.10:498 NM_033182:498 AK296025:498 AK301418:498 AK316284:498 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-33 |
|end=11654379 | |end=11654379 | ||
|end_of_center_position=11654374 | |end_of_center_position=11654374 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=93611 | |gene_id=93611 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:24847 | |hgnc_mgi_id=HGNC:24847 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304791 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=11654368 | |start=11654368 | ||
|start_of_center_position=11654373 | |start_of_center_position=11654373 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=76(GCCTCTTAAAGG,-,0.00),77(CCTCTTAAAGGC,+,0.00),78(CTCTTAAAGGCC,+,0.00) |
| − | |transcript_name=ENST00000251546.8 | + | |transcript_name=ENST00000251546.8 AK055344 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_622.1 | |tss_id=hg_622.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R4J6 | + | |uniprot_id=A0A024R4J6 |
}} | }} | ||
Revision as of 07:36, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654373 |
|---|---|
| End of the center position in the TSS region: | 11654374 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000251546.8 AK055344 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000251546.8:0 AK055344:0 NM_001304791:28 NM_183412:28 ENST00000425796.5:478 ENST00000376770.5:478 NR_130909:478 NM_001304790:478 NM_001330355:478 NM_001014765:478 NM_183413:478 CR749368:490 ENST00000251547.10:498 NM_033182:498 AK296025:498 AK301418:498 AK316284:498 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 44 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 76(GCCTCTTAAAGG,-,0.00),77(CCTCTTAAAGGC,+,0.00),78(CTCTTAAAGGCC,+,0.00) |
