Difference between revisions of "TSS:Hg 10541.1"
From referenceTSS
| Line 13: | Line 13: | ||
|U1E2= | |U1E2= | ||
|U1F= | |U1F= | ||
| − | |all_trans=ENST00000383925.1:3 NR_004400:3 | + | |all_trans=ENST00000383925.1:3 NR_004400:3 NR_004408:3 NR_004421:3 NR_004427:3 NR_004430:3 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 20: | Line 20: | ||
|end=16514289 | |end=16514289 | ||
|end_of_center_position=16514289 | |end_of_center_position=16514289 | ||
| − | |entrez_id= | + | |entrez_id=26870 |
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias= | + | |gene_alias=RNU1C1{{!}}RNU1C2{{!}}U1C1{{!}}U1C21 |
| − | |gene_description= | + | |gene_description=RNA, U1 small nuclear 2 |
|gene_id=26863 26869 26870 26871 6060 | |gene_id=26863 26869 26870 26871 6060 | ||
| − | |gene_name= | + | |gene_name=RNA, U1 small nuclear 1; RNA, U1 small nuclear 2; RNA, U1 small nuclear 3; RNA, U1 small nuclear 4; RNA, variant U1 small nuclear 18 |
|gene_source=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | |gene_source=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | ||
|gene_symbol=RNU1-1 RNU1-2 RNU1-3 RNU1-4 RNVU1-18 | |gene_symbol=RNU1-1 RNU1-2 RNU1-3 RNU1-4 RNVU1-18 | ||
| Line 31: | Line 31: | ||
|gene_type=snRNA | |gene_type=snRNA | ||
|hgnc_mgi_id=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | |hgnc_mgi_id=HGNC:10120 HGNC:10123 HGNC:10128 HGNC:10130 HGNC:37496 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000207005 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_004427 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_004427 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=16514287 | |start=16514287 | ||
|start_of_center_position=16514288 | |start_of_center_position=16514288 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000383925.1 NR_004400 NR_004430 | + | |transcript_name=ENST00000383925.1 NR_004400 NR_004408 NR_004421 NR_004427 NR_004430 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10541.1 | |tss_id=hg_10541.1 | ||
Revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16514288 |
|---|---|
| End of the center position in the TSS region: | 16514289 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000383925.1 NR_004400 NR_004408 NR_004421 NR_004427 NR_004430 |
|---|---|
| Distance: | 3 |
| Num_trans: | 6 |
| All_trans: | ENST00000383925.1:3 NR_004400:3 NR_004408:3 NR_004421:3 NR_004427:3 NR_004430:3 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_004427 |
| Entrez ID: | 26870 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_004427 |
| Nearest Ensembl: | ENSG00000207005 |
| Gene Name: | RNA, U1 small nuclear 1; RNA, U1 small nuclear 2; RNA, U1 small nuclear 3; RNA, U1 small nuclear 4; RNA, variant U1 small nuclear 18 |
| Gene Alias: | RNU1C1|RNU1C2|U1C1|U1C21 |
| Gene Description: | RNA, U1 small nuclear 2 |
| Gene Type: | snRNA |
| CpG%: | 0.055 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
