Difference between revisions of "TSS:Hg 10564.1"
From referenceTSS
| Line 3: | Line 3: | ||
|KRPPD= | |KRPPD= | ||
|PARK9= | |PARK9= | ||
| − | |all_trans=ENST00000341676.9:-31 | + | |all_trans=ENST00000341676.9:-31 BC030267:-31 ENST00000326735.13:-44 ENST00000452699.5:-44 NM_022089:-44 NM_001141973:-44 NM_001141974:-44 AK290210:-44 AY461712:90 AL354615:102 ENST00000617114.5:117 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=-31 | |distance=-31 | ||
| − | |distance_to_tss= | + | |distance_to_tss=49 |
|end=17011884 | |end=17011884 | ||
|end_of_center_position=17011879 | |end_of_center_position=17011879 | ||
|entrez_id=23400 | |entrez_id=23400 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
| − | |gene_alias=CLN12 | + | |gene_alias=CLN12{{!}}HSA9947{{!}}KRPPD{{!}}PARK9{{!}}SPG78 |
| − | |gene_description=ATPase 13A2 | + | |gene_description=ATPase cation transporting 13A2 |
|gene_id=23400 | |gene_id=23400 | ||
| − | |gene_name=ATPase 13A2 | + | |gene_name=ATPase cation transporting 13A2 |
|gene_source=HGNC:30213 | |gene_source=HGNC:30213 | ||
|gene_symbol=ATP13A2 | |gene_symbol=ATP13A2 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:30213 | |hgnc_mgi_id=HGNC:30213 | ||
|nearest_ensembl=ENSG00000159363 | |nearest_ensembl=ENSG00000159363 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001141974 |
|nearest_refseq=NM_022089 | |nearest_refseq=NM_022089 | ||
|nearest_unigene=Hs.128866 | |nearest_unigene=Hs.128866 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=17011873 | |start=17011873 | ||
|start_of_center_position=17011878 | |start_of_center_position=17011878 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000341676.9 | + | |transcript_name=ENST00000341676.9 BC030267 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10564.1 | |tss_id=hg_10564.1 | ||
Revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17011878 |
|---|---|
| End of the center position in the TSS region: | 17011879 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341676.9 BC030267 |
|---|---|
| Distance: | -31 |
| Num_trans: | 11 |
| All_trans: | ENST00000341676.9:-31 BC030267:-31 ENST00000326735.13:-44 ENST00000452699.5:-44 NM_022089:-44 NM_001141973:-44 NM_001141974:-44 AK290210:-44 AY461712:90 AL354615:102 ENST00000617114.5:117 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_001141974 |
| Entrez ID: | 23400 |
| Nearest Unigene: | Hs.128866 |
| Nearest Refseq: | NM_022089 |
| Nearest Ensembl: | ENSG00000159363 |
| Gene Name: | ATPase cation transporting 13A2 |
| Gene Alias: | CLN12|HSA9947|KRPPD|PARK9|SPG78 |
| Gene Description: | ATPase cation transporting 13A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
