Difference between revisions of "TSS:Hg 106037.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=150 |entrez_id=5728 |gc_percent=0.706468 |gene_alias=10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 |gene_description=phosphat...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BZS= | ||
| + | |CWS1= | ||
| + | |DEC= | ||
| + | |GLM2= | ||
| + | |MHAM= | ||
| + | |MMAC1= | ||
| + | |PTEN1= | ||
| + | |TEP1= | ||
| + | |all_trans=BC005821:40 U96180:86 ENST00000610634.1:-145 NM_000314:-145 NM_001304717:-145 NM_001304718:-145 uc057ush.1:-145 U92436:-145 ENST00000371953.7:-470 uc001kfb.4:-470 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=40 | ||
|distance_to_tss=150 | |distance_to_tss=150 | ||
| + | |end=87863593 | ||
|entrez_id=5728 | |entrez_id=5728 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 | |gene_alias=10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 | ||
|gene_description=phosphatase and tensin homolog | |gene_description=phosphatase and tensin homolog | ||
| − | |gene_name=PTEN | + | |gene_id=5728 |
| + | |gene_name=phosphatase and tensin homolog | ||
| + | |gene_source=HGNC:9588 | ||
| + | |gene_symbol=PTEN | ||
| + | |gene_synonyms=MMAC1 PTEN1 TEP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9588 | ||
|nearest_ensembl=ENSG00000171862 | |nearest_ensembl=ENSG00000171862 | ||
|nearest_promoter_id=NM_000314 | |nearest_promoter_id=NM_000314 | ||
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=87863582 | ||
| + | |strand=+ | ||
|tata_box="-18(CTCTTTATGCGC,+,0.00)" | |tata_box="-18(CTCTTTATGCGC,+,0.00)" | ||
| + | |transcript_name=BC005821 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106037.1 | |tss_id=hg_106037.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:01, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC005821 |
|---|---|
| Distance: | 40 |
| Num_trans: | 10 |
| All_trans: | BC005821:40 U96180:86 ENST00000610634.1:-145 NM_000314:-145 NM_001304717:-145 NM_001304718:-145 uc057ush.1:-145 U92436:-145 ENST00000371953.7:-470 uc001kfb.4:-470 |
TATA-Box annotation
| Distance to TSS: | 150 |
|---|---|
| Nearest PromoterID: | NM_000314 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | phosphatase and tensin homolog |
| Gene Alias: | 10q23del |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-18(CTCTTTATGCGC,+,0.00)" |
