Difference between revisions of "TSS:Hg 223670.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000371077.9:-12 ENST00000611228.4:-12 | + | |all_trans=ENST00000371077.9:-12 ENST00000611228.4:-12 NR_158768:-16 NM_001366232:-16 NM_001366235:-16 NM_001366234:-16 NM_001366233:-16 NM_152489:-16 NR_158769:-16 ENST00000371076.7:163 HM005529:163 BC029895:163 CU688784:406 DQ891312:406 DQ894496:406 KJ895622:406 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=-12 | |distance=-12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=64203644 | |end=64203644 | ||
|end_of_center_position=64203642 | |end_of_center_position=64203642 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=ubiquitin conjugating enzyme E2 U | + | |gene_description=ubiquitin conjugating enzyme E2 U |
|gene_id=148581 | |gene_id=148581 | ||
| − | |gene_name=ubiquitin conjugating enzyme E2 U | + | |gene_name=ubiquitin conjugating enzyme E2 U |
|gene_source=HGNC:28559 | |gene_source=HGNC:28559 | ||
|gene_symbol=UBE2U | |gene_symbol=UBE2U | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152489 | |nearest_refseq=NM_152489 | ||
|nearest_unigene=Hs.388746 | |nearest_unigene=Hs.388746 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=64203638 | |start=64203638 | ||
|start_of_center_position=64203641 | |start_of_center_position=64203641 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000371077.9 ENST00000611228.4 | + | |transcript_name=ENST00000371077.9 ENST00000611228.4 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_223670.1 | |tss_id=hg_223670.1 | ||
Revision as of 09:02, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 64203641 |
|---|---|
| End of the center position in the TSS region: | 64203642 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371077.9 ENST00000611228.4 |
|---|---|
| Distance: | -12 |
| Num_trans: | 16 |
| All_trans: | ENST00000371077.9:-12 ENST00000611228.4:-12 NR_158768:-16 NM_001366232:-16 NM_001366235:-16 NM_001366234:-16 NM_001366233:-16 NM_152489:-16 NR_158769:-16 ENST00000371076.7:163 HM005529:163 BC029895:163 CU688784:406 DQ891312:406 DQ894496:406 KJ895622:406 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_152489 |
| Entrez ID: | 148581 |
| Nearest Unigene: | Hs.388746 |
| Nearest Refseq: | NM_152489 |
| Nearest Ensembl: | ENSG00000177414 |
| Gene Name: | ubiquitin conjugating enzyme E2 U |
| Gene Alias: | - |
| Gene Description: | ubiquitin conjugating enzyme E2 U |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
