Difference between revisions of "TSS:Hg 236088.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000371077.9:-81 ENST00000611228.4:-81 NR_158768:-85 NM_001366232:-85 NM_001366235:-85 NM_001366234:-85 NM_001366233:-85 NM_152489:-85 NR_158769:-85 ENST00000371076.7:99 HM005529:99 BC029895:99 CU688784:342 DQ891312:342 DQ894496:342 KJ895622:342 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=-81 |
|distance_to_tss=28 | |distance_to_tss=28 | ||
|end=29454529 | |end=29454529 | ||
|end_of_center_position=64203708 | |end_of_center_position=64203708 | ||
| − | |entrez_id= | + | |entrez_id=79008 |
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias= | + | |gene_alias=GIYD2 |
| − | |gene_description= | + | |gene_description=SLX1 homolog B, structure-specific endonuclease subunit |
| − | |gene_id= | + | |gene_id=148581 |
| − | |gene_name= | + | |gene_name=ubiquitin conjugating enzyme E2 U |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:28559 |
| − | |gene_symbol= | + | |gene_symbol=UBE2U |
| − | |gene_synonyms= | + | |gene_synonyms=MGC35130 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:28559 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000181625 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_024044 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_024044 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.728161 |
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=29454528 | |start=29454528 | ||
|start_of_center_position=64203707 | |start_of_center_position=64203707 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000371077.9 ENST00000611228.4 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236088.1 | |tss_id=hg_236088.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0A0MRP4 Q5VVX9 |
}} | }} | ||
Revision as of 13:48, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 64203707 |
|---|---|
| End of the center position in the TSS region: | 64203708 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371077.9 ENST00000611228.4 |
|---|---|
| Distance: | -81 |
| Num_trans: | 16 |
| All_trans: | ENST00000371077.9:-81 ENST00000611228.4:-81 NR_158768:-85 NM_001366232:-85 NM_001366235:-85 NM_001366234:-85 NM_001366233:-85 NM_152489:-85 NR_158769:-85 ENST00000371076.7:99 HM005529:99 BC029895:99 CU688784:342 DQ891312:342 DQ894496:342 KJ895622:342 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_024044 |
| Entrez ID: | 79008 |
| Nearest Unigene: | Hs.728161 |
| Nearest Refseq: | NM_024044 |
| Nearest Ensembl: | ENSG00000181625 |
| Gene Name: | ubiquitin conjugating enzyme E2 U |
| Gene Alias: | GIYD2 |
| Gene Description: | SLX1 homolog B, structure-specific endonuclease subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
