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Difference between revisions of "TSS:Hg 100271.1"

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Line 4: Line 4:
 
|P15=
 
|P15=
 
|TP15=
 
|TP15=
|all_trans=ENST00000380142.4:-23 uc003zpn.4:-23 AF004819:-23 U17075:-23 L36844:-30 BC014469:-32 NM_004936:-64 NM_078487:-64 ENST00000276925.6:-114 uc003zpo.4:-114 JQ694046:142 JQ694047:142 JQ694048:142 JX391994:266 AM393264:290 AM393391:290 CR536529:290 AM392641:290 AM392962:290 AB462998:290
+
|all_trans=ENST00000380142.5:-23 AF004819:-23 U17075:-23 L36844:-30 BC014469:-32 ENST00000276925.7:-56 NM_004936:-56 NM_078487:-64 LF355649:-122 MA591226:-122 LF213880:-123 MA449457:-123 LF206515:-131 MA442092:-131 JQ694046:142 JQ694047:142 JQ694048:142 JX391994:266 AM393264:290 AM393391:290 CR536529:290 AM392641:290 AM392962:290 AB462998:290
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.105
 
|cpg_percent=0.105
 
|distance=-23
 
|distance=-23
|distance_to_tss=67
+
|distance_to_tss=59
 
|end=22009249
 
|end=22009249
 
|end_of_center_position=22009246
 
|end_of_center_position=22009246
 
|entrez_id=1030
 
|entrez_id=1030
 
|gc_percent=0.666667
 
|gc_percent=0.666667
|gene_alias=CDK4I
+
|gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b
 
|gene_description=cyclin dependent kinase inhibitor 2B
 
|gene_description=cyclin dependent kinase inhibitor 2B
 
|gene_id=1030
 
|gene_id=1030
|gene_name=cyclin-dependent kinase inhibitor 2B
+
|gene_name=cyclin dependent kinase inhibitor 2B
 
|gene_source=HGNC:1788
 
|gene_source=HGNC:1788
 
|gene_symbol=CDKN2B
 
|gene_symbol=CDKN2B
Line 26: Line 26:
 
|nearest_refseq=NM_004936
 
|nearest_refseq=NM_004936
 
|nearest_unigene=Hs.72901
 
|nearest_unigene=Hs.72901
|num_trans=20
+
|num_trans=24
 
|p15INK4b=
 
|p15INK4b=
 
|species=human
 
|species=human
Line 32: Line 32:
 
|start_of_center_position=22009245
 
|start_of_center_position=22009245
 
|strand=-
 
|strand=-
|transcript_name=ENST00000380142.4 uc003zpn.4 AF004819 U17075
+
|transcript_name=ENST00000380142.5 AF004819 U17075
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100271.1
 
|tss_id=hg_100271.1

Revision as of 14:21, 14 June 2021

Basic information about the TSS


TSS ID:hg_100271.1
Species:human
Chr:chr9
TSS Classification:yes
Start:22009242
End:22009249
Strand:-
TSS Score:1
Start of the center position in the TSS region:22009245
End of the center position in the TSS region:22009246



Gene and protein annotation


Transcript_name:ENST00000380142.5 AF004819 U17075
Distance:-23
GeneID:1030
HGNC/MGI_ID:HGNC:1788
UniProt_ID:P42772
Gene_name:cyclin dependent kinase inhibitor 2B
Gene_symbol:CDKN2B
Gene_synonyms:CDK4I INK4B MTS2 P15 TP15 p15INK4b
Gene_source:HGNC:1788



Transcript annotation


Transcript_name:ENST00000380142.5 AF004819 U17075
Distance:-23
Num_trans:24
All_trans:ENST00000380142.5:-23 AF004819:-23 U17075:-23 L36844:-30 BC014469:-32 ENST00000276925.7:-56 NM_004936:-56 NM_078487:-64 LF355649:-122 MA591226:-122 LF213880:-123 MA449457:-123 LF206515:-131 MA442092:-131 JQ694046:142 JQ694047:142 JQ694048:142 JX391994:266 AM393264:290 AM393391:290 CR536529:290 AM392641:290 AM392962:290 AB462998:290



TATA-Box annotation


Distance to TSS:59
Nearest PromoterID:NM_004936
Entrez ID:1030
Nearest Unigene:Hs.72901
Nearest Refseq:NM_004936
Nearest Ensembl:ENSG00000147883
Gene Name:cyclin dependent kinase inhibitor 2B
Gene Alias:CDK4I
Gene Description:cyclin dependent kinase inhibitor 2B
Gene Type:protein-coding
CpG%:0.105
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):