Difference between revisions of "TSS:Hg 100315.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CAAP= | |CAAP= | ||
| − | |all_trans=ENST00000625311.1 | + | |all_trans=ENST00000625311.1:0 AK300739:0 AK301673:29 ENST00000495958.5:-149 HQ447530:-261 AB590748:-261 CU687198:-261 BC071953:-272 ENST00000483493.6:-332 ENST00000650615.1:-337 ENST00000333916.8:-347 NM_024828:-347 AK023719:-347 ENST00000520187.1:-348 BC014658:-349 NM_001167575:-373 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=374 |
|end=26892455 | |end=26892455 | ||
|end_of_center_position=26892428 | |end_of_center_position=26892428 | ||
|entrez_id=79886 | |entrez_id=79886 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=C9orf82 | + | |gene_alias=C9orf82|CAAP |
|gene_description=caspase activity and apoptosis inhibitor 1 | |gene_description=caspase activity and apoptosis inhibitor 1 | ||
|gene_id=79886 | |gene_id=79886 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:25834 | |hgnc_mgi_id=HGNC:25834 | ||
|nearest_ensembl=ENSG00000120159 | |nearest_ensembl=ENSG00000120159 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_024828 |
|nearest_refseq=NM_024828 | |nearest_refseq=NM_024828 | ||
|nearest_unigene=Hs.178357 | |nearest_unigene=Hs.178357 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=26892400 | |start=26892400 | ||
|start_of_center_position=26892427 | |start_of_center_position=26892427 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000625311.1 | + | |transcript_name=ENST00000625311.1 AK300739 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100315.1 | |tss_id=hg_100315.1 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26892427 |
|---|---|
| End of the center position in the TSS region: | 26892428 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000625311.1 AK300739 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000625311.1:0 AK300739:0 AK301673:29 ENST00000495958.5:-149 HQ447530:-261 AB590748:-261 CU687198:-261 BC071953:-272 ENST00000483493.6:-332 ENST00000650615.1:-337 ENST00000333916.8:-347 NM_024828:-347 AK023719:-347 ENST00000520187.1:-348 BC014658:-349 NM_001167575:-373 |
TATA-Box annotation
| Distance to TSS: | 374 |
|---|---|
| Nearest PromoterID: | NM_024828 |
| Entrez ID: | 79886 |
| Nearest Unigene: | Hs.178357 |
| Nearest Refseq: | NM_024828 |
| Nearest Ensembl: | ENSG00000120159 |
| Gene Name: | caspase activity and apoptosis inhibitor 1 |
| Gene Alias: | C9orf82 |
| Gene Description: | caspase activity and apoptosis inhibitor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
