Difference between revisions of "TSS:Hg 100727.1"
From referenceTSS
| Line 2: | Line 2: | ||
|GLYD= | |GLYD= | ||
|PH2= | |PH2= | ||
| − | |all_trans=ENST00000452923 | + | |all_trans=ENST00000452923.1:27 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=27 | |distance=27 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-38230 |
|end=37384472 | |end=37384472 | ||
|end_of_center_position=37384467 | |end_of_center_position=37384467 | ||
|entrez_id=9380 | |entrez_id=9380 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=GLXR | + | |gene_alias=GLXR|GLYD|PH2 |
|gene_description=glyoxylate and hydroxypyruvate reductase | |gene_description=glyoxylate and hydroxypyruvate reductase | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=long intergenic non-protein coding RNA 1627 | ||
| + | |gene_source=HGNC:52258 | ||
| + | |gene_symbol=LINC01627 | ||
| + | |gene_synonyms=RP11-397D12.4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:52258 | ||
|nearest_ensembl=ENSG00000137106 | |nearest_ensembl=ENSG00000137106 | ||
|nearest_promoter_id=NM_012203 | |nearest_promoter_id=NM_012203 | ||
|nearest_refseq=NM_012203 | |nearest_refseq=NM_012203 | ||
|nearest_unigene=Hs.155742 | |nearest_unigene=Hs.155742 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=37384460 | |start=37384460 | ||
|start_of_center_position=37384466 | |start_of_center_position=37384466 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000452923 | + | |transcript_name=ENST00000452923.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100727.1 | |tss_id=hg_100727.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 15:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37384466 |
|---|---|
| End of the center position in the TSS region: | 37384467 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000452923.1 |
|---|---|
| Distance: | 27 |
| Num_trans: | 1 |
| All_trans: | ENST00000452923.1:27 |
TATA-Box annotation
| Distance to TSS: | -38230 |
|---|---|
| Nearest PromoterID: | NM_012203 |
| Entrez ID: | 9380 |
| Nearest Unigene: | Hs.155742 |
| Nearest Refseq: | NM_012203 |
| Nearest Ensembl: | ENSG00000137106 |
| Gene Name: | long intergenic non-protein coding RNA 1627 |
| Gene Alias: | GLXR |
| Gene Description: | glyoxylate and hydroxypyruvate reductase |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
