Difference between revisions of "TSS:Hg 100762.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000540557 | + | |all_trans=ENST00000540557.1:-229 BC029953:-260 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=-229 | |distance=-229 | ||
| − | |distance_to_tss= | + | |distance_to_tss=778 |
|end=38068458 | |end=38068458 | ||
|end_of_center_position=38068450 | |end_of_center_position=38068450 | ||
| Line 12: | Line 12: | ||
|gene_description=SH2 domain containing adaptor protein B | |gene_description=SH2 domain containing adaptor protein B | ||
|gene_id=6461 | |gene_id=6461 | ||
| − | |gene_name= | + | |gene_name=SHB |
|gene_source=HGNC:10838 | |gene_source=HGNC:10838 | ||
|gene_symbol=SHB | |gene_symbol=SHB | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_003028 | |nearest_refseq=NM_003028 | ||
|nearest_unigene=Hs.521482 | |nearest_unigene=Hs.521482 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=38068440 | |start=38068440 | ||
|start_of_center_position=38068449 | |start_of_center_position=38068449 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000540557 | + | |transcript_name=ENST00000540557.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100762.1 | |tss_id=hg_100762.1 | ||
Latest revision as of 15:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 38068449 |
|---|---|
| End of the center position in the TSS region: | 38068450 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000540557.1 |
|---|---|
| Distance: | -229 |
| Num_trans: | 2 |
| All_trans: | ENST00000540557.1:-229 BC029953:-260 |
TATA-Box annotation
| Distance to TSS: | 778 |
|---|---|
| Nearest PromoterID: | NM_003028 |
| Entrez ID: | 6461 |
| Nearest Unigene: | Hs.521482 |
| Nearest Refseq: | NM_003028 |
| Nearest Ensembl: | ENSG00000107338 |
| Gene Name: | SHB |
| Gene Alias: | bA3J10.2 |
| Gene Description: | SH2 domain containing adaptor protein B |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
