Difference between revisions of "TSS:Mm 9940.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000175916.7:0 ENSMUST00000177288.3 | + | |all_trans=ENSMUST00000175916.7:0 ENSMUST00000177288.3:0 BC051411:0 AK052889:0 NM_008937:-83 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=119 |
|end=190170744 | |end=190170744 | ||
|end_of_center_position=190170708 | |end_of_center_position=190170708 | ||
|entrez_id=19130 | |entrez_id=19130 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=A230003G05Rik | + | |gene_alias=A230003G05Rik{{!}}PROX-1 |
|gene_description=prospero homeobox 1 | |gene_description=prospero homeobox 1 | ||
|gene_id=19130 | |gene_id=19130 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_008937 | |nearest_refseq=NM_008937 | ||
|nearest_unigene=Mm.132579 | |nearest_unigene=Mm.132579 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=190170671 | |start=190170671 | ||
|start_of_center_position=190170707 | |start_of_center_position=190170707 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000175916.7 ENSMUST00000177288.3 | + | |transcript_name=ENSMUST00000175916.7 ENSMUST00000177288.3 BC051411 AK052889 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_9940.1 | |tss_id=mm_9940.1 | ||
Revision as of 03:50, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 190170707 |
|---|---|
| End of the center position in the TSS region: | 190170708 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000175916.7 ENSMUST00000177288.3 BC051411 AK052889 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000175916.7:0 ENSMUST00000177288.3:0 BC051411:0 AK052889:0 NM_008937:-83 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_008937 |
| Entrez ID: | 19130 |
| Nearest Unigene: | Mm.132579 |
| Nearest Refseq: | NM_008937 |
| Nearest Ensembl: | ENSMUSG00000010175 |
| Gene Name: | prospero homeobox 1 |
| Gene Alias: | A230003G05Rik|PROX-1 |
| Gene Description: | prospero homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
