Difference between revisions of "TSS:Hg 101311.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF331647:-378 MA567224:-378 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-378 |
|distance_to_tss=59116 | |distance_to_tss=59116 | ||
|end=89377974 | |end=89377974 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_024077 | |nearest_refseq=NM_024077 | ||
|nearest_unigene=Hs.59804 | |nearest_unigene=Hs.59804 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=89377960 | |start=89377960 | ||
|start_of_center_position=89377967 | |start_of_center_position=89377967 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF331647 MA567224 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101311.1 | |tss_id=hg_101311.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:37, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 89377967 |
|---|---|
| End of the center position in the TSS region: | 89377968 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF331647 MA567224 |
|---|---|
| Distance: | -378 |
| Num_trans: | 2 |
| All_trans: | LF331647:-378 MA567224:-378 |
TATA-Box annotation
| Distance to TSS: | 59116 |
|---|---|
| Nearest PromoterID: | NM_001282690 |
| Entrez ID: | 79048 |
| Nearest Unigene: | Hs.59804 |
| Nearest Refseq: | NM_024077 |
| Nearest Ensembl: | ENSG00000187742 |
| Gene Name: | SECISBP2 |
| Gene Alias: | SBP2 |
| Gene Description: | SECIS binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
