Difference between revisions of "TSS:Hg 233162.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SCA21= | |SCA21= | ||
| + | |all_trans=AB208849:38 ENST00000444179.5:-255 ENST00000414115.5:-274 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=38 |
| − | |distance_to_tss=- | + | |distance_to_tss=-1095 |
|end=1541722 | |end=1541722 | ||
|end_of_center_position=154968619 | |end_of_center_position=154968619 | ||
|entrez_id=339453 | |entrez_id=339453 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=C1orf70 | + | |gene_alias=C1orf70{{!}}SCA21 |
|gene_description=transmembrane protein 240 | |gene_description=transmembrane protein 240 | ||
| − | |gene_name= | + | |gene_id=6464 |
| + | |gene_name=SHC adaptor protein 1 | ||
| + | |gene_source=HGNC:10840 | ||
| + | |gene_symbol=SHC1 | ||
| + | |gene_synonyms=ShcA p66 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10840 | ||
|nearest_ensembl=ENSG00000205090 | |nearest_ensembl=ENSG00000205090 | ||
|nearest_promoter_id=NM_001114748 | |nearest_promoter_id=NM_001114748 | ||
|nearest_refseq=NM_001114748 | |nearest_refseq=NM_001114748 | ||
|nearest_unigene=Hs.668654 | |nearest_unigene=Hs.668654 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=1541715 | |start=1541715 | ||
|start_of_center_position=154968618 | |start_of_center_position=154968618 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AB208849 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233162.1 | |tss_id=hg_233162.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q59HB0 | ||
}} | }} | ||
Revision as of 12:41, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 154968618 |
|---|---|
| End of the center position in the TSS region: | 154968619 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB208849 |
|---|---|
| Distance: | 38 |
| Num_trans: | 3 |
| All_trans: | AB208849:38 ENST00000444179.5:-255 ENST00000414115.5:-274 |
TATA-Box annotation
| Distance to TSS: | -1095 |
|---|---|
| Nearest PromoterID: | NM_001114748 |
| Entrez ID: | 339453 |
| Nearest Unigene: | Hs.668654 |
| Nearest Refseq: | NM_001114748 |
| Nearest Ensembl: | ENSG00000205090 |
| Gene Name: | SHC adaptor protein 1 |
| Gene Alias: | C1orf70|SCA21 |
| Gene Description: | transmembrane protein 240 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
