Difference between revisions of "TSS:Hg 243393.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 AB189440:-10 ENST00000551845.5:-77 ENST00000429896.6:-228 U43148:-228 NM_001083606:-238 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-10 |
| − | |distance_to_tss= | + | |distance_to_tss=205 |
|end=113303171 | |end=113303171 | ||
|end_of_center_position=95507189 | |end_of_center_position=95507189 | ||
| − | |entrez_id= | + | |entrez_id=NA |
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias= | + | |gene_alias= |
| − | |gene_description= | + | |gene_description= |
| − | |gene_id= | + | |gene_id=5727 |
| − | |gene_name= | + | |gene_name=patched 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9585 |
| − | |gene_symbol= | + | |gene_symbol=PTCH1 |
| − | |gene_synonyms= | + | |gene_synonyms=BCNS |
| − | |gene_type= | + | |gene_type= |
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9585 |
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001371236 |
| − | |nearest_refseq= | + | |nearest_refseq= |
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=113303170 | |start=113303170 | ||
|start_of_center_position=95507188 | |start_of_center_position=95507188 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000418258.5 ENST00000553011.5 NM_001083607 AB189440 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243393.1 | |tss_id=hg_243393.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0C4DGI4 Q13635 |
}} | }} | ||
Revision as of 16:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95507188 |
|---|---|
| End of the center position in the TSS region: | 95507189 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000418258.5 ENST00000553011.5 NM_001083607 AB189440 |
|---|---|
| Distance: | -10 |
| Num_trans: | 8 |
| All_trans: | ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 AB189440:-10 ENST00000551845.5:-77 ENST00000429896.6:-228 U43148:-228 NM_001083606:-238 |
TATA-Box annotation
| Distance to TSS: | 205 |
|---|---|
| Nearest PromoterID: | NM_001371236 |
| Entrez ID: | NA |
| Nearest Unigene: | |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | patched 1 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.045 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
