Difference between revisions of "TSS:Hg 233209.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000674537.1:0 ENST00000497019.7:8 AK126428:8 ENST00000392302.7:-15 ENST00000489021.6:-31 NM_001007792:79 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=MSTO2 | |gene_alias=MSTO2 | ||
| − | |gene_description= | + | |gene_description=misato family member 2, pseudogene |
| − | |gene_id= | + | |gene_id=4914 |
| − | |gene_name= | + | |gene_name=neurotrophic receptor tyrosine kinase 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8031 |
| − | |gene_symbol= | + | |gene_symbol=NTRK1 |
| − | |gene_synonyms= | + | |gene_synonyms=MTC TRK TRKA |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8031 |
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024117 | |nearest_promoter_id=NR_024117 | ||
|nearest_refseq=NR_024117 | |nearest_refseq=NR_024117 | ||
|nearest_unigene=Hs.656361 | |nearest_unigene=Hs.656361 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=155745815 | |start=155745815 | ||
|start_of_center_position=156815670 | |start_of_center_position=156815670 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000674537.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233209.1 | |tss_id=hg_233209.1 | ||
Revision as of 12:42, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 156815670 |
|---|---|
| End of the center position in the TSS region: | 156815671 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000674537.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000674537.1:0 ENST00000497019.7:8 AK126428:8 ENST00000392302.7:-15 ENST00000489021.6:-31 NM_001007792:79 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_024117 |
| Entrez ID: | 100129405 |
| Nearest Unigene: | Hs.656361 |
| Nearest Refseq: | NR_024117 |
| Nearest Ensembl: | |
| Gene Name: | neurotrophic receptor tyrosine kinase 1 |
| Gene Alias: | MSTO2 |
| Gene Description: | misato family member 2, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.11 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
