Difference between revisions of "TSS:Hg 101780.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000664068.1:-42 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-42 |
|distance_to_tss=659 | |distance_to_tss=659 | ||
|end=104091823 | |end=104091823 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SMC2 antisense RNA 1 (head to head) | |gene_description=SMC2 antisense RNA 1 (head to head) | ||
| − | |gene_name=SMC2- | + | |gene_id=101928550 |
| + | |gene_name=SMC2 divergent transcript | ||
| + | |gene_source=HGNC:50827 | ||
| + | |gene_symbol=SMC2-DT | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:50827 | ||
|nearest_ensembl=ENSG00000270332 | |nearest_ensembl=ENSG00000270332 | ||
|nearest_promoter_id=NR_121580 | |nearest_promoter_id=NR_121580 | ||
|nearest_refseq=NR_121580 | |nearest_refseq=NR_121580 | ||
|nearest_unigene=Hs.144722 | |nearest_unigene=Hs.144722 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=104091807 | |start=104091807 | ||
|start_of_center_position=104091815 | |start_of_center_position=104091815 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-73(GTCCTTATATGG,-,0.00),-71(CCTTATATGGAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000664068.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101780.1 | |tss_id=hg_101780.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104091815 |
|---|---|
| End of the center position in the TSS region: | 104091816 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000664068.1 |
|---|---|
| Distance: | -42 |
| Num_trans: | 1 |
| All_trans: | ENST00000664068.1:-42 |
TATA-Box annotation
| Distance to TSS: | 659 |
|---|---|
| Nearest PromoterID: | NR_121580 |
| Entrez ID: | 101928550 |
| Nearest Unigene: | Hs.144722 |
| Nearest Refseq: | NR_121580 |
| Nearest Ensembl: | ENSG00000270332 |
| Gene Name: | SMC2 divergent transcript |
| Gene Alias: | - |
| Gene Description: | SMC2 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -73(GTCCTTATATGG,-,0.00),-71(CCTTATATGGAA,+,0.00) |
