Difference between revisions of "TSS:Hg 102048.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=96659 | |distance_to_tss=96659 | ||
|end=112078645 | |end=112078645 | ||
| Line 13: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000106868 | |nearest_ensembl=ENSG00000106868 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282640 |
|nearest_refseq=NM_022486 | |nearest_refseq=NM_022486 | ||
|nearest_unigene=Hs.494827 | |nearest_unigene=Hs.494827 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=112078637 | |start_of_center_position=112078637 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CCTTTAATATCA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112078637 |
|---|---|
| End of the center position in the TSS region: | 112078638 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 96659 |
|---|---|
| Nearest PromoterID: | NM_001282640 |
| Entrez ID: | 64420 |
| Nearest Unigene: | Hs.494827 |
| Nearest Refseq: | NM_022486 |
| Nearest Ensembl: | ENSG00000106868 |
| Gene Name: | SUSD1 |
| Gene Alias: | - |
| Gene Description: | sushi domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCTTTAATATCA,+,0.00) |
