Difference between revisions of "TSS:Hg 145190.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000619151.4:0 NM_001519:0 NM_001242788:0 NM_001242790:0 uc059fzf.1:0 U28838:0 BC016743:49 EU668327:49 ENST00000548421.2:-256 uc001yqr.4:-256 ENST0...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BRF-1= | ||
| + | |CFDS= | ||
| + | |GTF3B= | ||
| + | |HEL-S-76p= | ||
| + | |TAF3B2= | ||
| + | |TAF3C= | ||
| + | |TAFIII90= | ||
| + | |TF3B90= | ||
| + | |TFIIIB90= | ||
|all_trans=ENST00000619151.4:0 NM_001519:0 NM_001242788:0 NM_001242790:0 uc059fzf.1:0 U28838:0 BC016743:49 EU668327:49 ENST00000548421.2:-256 uc001yqr.4:-256 ENST00000379937.6:262 uc010axg.2:262 BC086856:262 ENST00000547530.6:299 U75276:299 CU677703:355 AB527272:357 AJ297408:416 | |all_trans=ENST00000619151.4:0 NM_001519:0 NM_001242788:0 NM_001242790:0 uc059fzf.1:0 U28838:0 BC016743:49 EU668327:49 ENST00000548421.2:-256 uc001yqr.4:-256 ENST00000379937.6:262 uc010axg.2:262 BC086856:262 ENST00000547530.6:299 U75276:299 CU677703:355 AB527272:357 AJ297408:416 | ||
|chr=chr14 | |chr=chr14 | ||
| Line 6: | Line 15: | ||
|distance_to_tss=-12 | |distance_to_tss=-12 | ||
|end=105301022 | |end=105301022 | ||
| + | |end_of_center_position=105301005 | ||
|entrez_id=2972 | |entrez_id=2972 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=BRF | + | |gene_alias=BRF |
|gene_description="BRF1, RNA polymerase III transcription initiation factor subunit" | |gene_description="BRF1, RNA polymerase III transcription initiation factor subunit" | ||
|gene_id=2972 | |gene_id=2972 | ||
| Line 16: | Line 26: | ||
|gene_synonyms=BRF Berg36 ERF1 RNF162B TFIIIB90 TIS11B cMG1 hBRF | |gene_synonyms=BRF Berg36 ERF1 RNF162B TFIIIB90 TIS11B cMG1 hBRF | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hBRF= | ||
|hgnc_mgi_id=HGNC:1107 HGNC:11551 | |hgnc_mgi_id=HGNC:1107 HGNC:11551 | ||
|nearest_ensembl=ENSG00000185024 | |nearest_ensembl=ENSG00000185024 | ||
| Line 24: | Line 35: | ||
|species=human | |species=human | ||
|start=105300986 | |start=105300986 | ||
| + | |start_of_center_position=105301004 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000619151.4 NM_001519 NM_001242788 NM_001242790 uc059fzf.1 U28838 | |transcript_name=ENST00000619151.4 NM_001519 NM_001242788 NM_001242790 uc059fzf.1 U28838 | ||
Revision as of 06:43, 14 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105301004 |
|---|---|
| End of the center position in the TSS region: | 105301005 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000619151.4 NM_001519 NM_001242788 NM_001242790 uc059fzf.1 U28838 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000619151.4:0 NM_001519:0 NM_001242788:0 NM_001242790:0 uc059fzf.1:0 U28838:0 BC016743:49 EU668327:49 ENST00000548421.2:-256 uc001yqr.4:-256 ENST00000379937.6:262 uc010axg.2:262 BC086856:262 ENST00000547530.6:299 U75276:299 CU677703:355 AB527272:357 AJ297408:416 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001242788 |
| Entrez ID: | 2972 |
| Nearest Unigene: | Hs.424484 |
| Nearest Refseq: | NM_001519 |
| Nearest Ensembl: | ENSG00000185024 |
| Gene Name: | "BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit; ZFP36 ring finger protein-like 1" |
| Gene Alias: | BRF |
| Gene Description: | "BRF1, RNA polymerase III transcription initiation factor subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
