Difference between revisions of "TSS:Mm 38142.1"
From referenceTSS
| Line 5: | Line 5: | ||
|FHCB1= | |FHCB1= | ||
|FHCB2= | |FHCB2= | ||
| − | |all_trans=NM_145554 | + | |all_trans=NM_145554:0 AK029008:0 AK148340:0 BC066808:0 BC067411:0 AK159800:0 AK167290:0 BC021467:0 ENSMUST00000037828.7:-14 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 14: | Line 14: | ||
|entrez_id=100017 | |entrez_id=100017 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=AA691260 | + | |gene_alias=AA691260{{!}}ARH2{{!}}Arh{{!}}Arh1{{!}}FHCB1{{!}}FHCB2 |
|gene_description=low density lipoprotein receptor adaptor protein 1 | |gene_description=low density lipoprotein receptor adaptor protein 1 | ||
|gene_id=100017 | |gene_id=100017 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_145554 | |nearest_refseq=NM_145554 | ||
|nearest_unigene=Mm.27486 | |nearest_unigene=Mm.27486 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=134767940 | |start=134767940 | ||
|start_of_center_position=134767975 | |start_of_center_position=134767975 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_145554 | + | |transcript_name=NM_145554 AK029008 AK148340 BC066808 BC067411 AK159800 AK167290 BC021467 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_38142.1 | |tss_id=mm_38142.1 | ||
Revision as of 04:33, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134767975 |
|---|---|
| End of the center position in the TSS region: | 134767976 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_145554 AK029008 AK148340 BC066808 BC067411 AK159800 AK167290 BC021467 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | NM_145554:0 AK029008:0 AK148340:0 BC066808:0 BC067411:0 AK159800:0 AK167290:0 BC021467:0 ENSMUST00000037828.7:-14 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_145554 |
| Entrez ID: | 100017 |
| Nearest Unigene: | Mm.27486 |
| Nearest Refseq: | NM_145554 |
| Nearest Ensembl: | ENSMUSG00000037295 |
| Gene Name: | low density lipoprotein receptor adaptor protein 1 |
| Gene Alias: | AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2 |
| Gene Description: | low density lipoprotein receptor adaptor protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
