Difference between revisions of "TSS:Hg 6539.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000496973.5:0 ENST00000481744.5 | + | |all_trans=ENST00000359326.9:0 ENST00000496973.5:0 ENST00000481744.5:0 ENST00000466580.6:0 ENST00000459772.5:0 NR_159440:0 NM_001320050:0 NM_001366771:0 NM_001366769:0 NM_001366768:0 NM_001320047:0 NM_001366773:0 NM_001366772:0 NM_001366770:0 AK303296:0 BC011012:0 AK001568:0 BC091516:0 AK310638:0 AK096493:0 AK299369:0 EU832166:4 EU832260:4 NM_001363739:-24 NM_001320048:-24 ENST00000472795.5:-293 NM_001320051:-293 BC011445:-293 ENST00000286031.10:310 AL354614:310 LF320375:-318 MA555952:-318 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=21 |
|end=169795099 | |end=169795099 | ||
|end_of_center_position=169795061 | |end_of_center_position=169795061 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:25565 | |hgnc_mgi_id=HGNC:25565 | ||
|nearest_ensembl=ENSG00000000460 | |nearest_ensembl=ENSG00000000460 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366768 |
|nearest_refseq=NM_018186 | |nearest_refseq=NM_018186 | ||
|nearest_unigene=Hs.443551 | |nearest_unigene=Hs.443551 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=169795022 | |start=169795022 | ||
|start_of_center_position=169795060 | |start_of_center_position=169795060 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000496973.5 ENST00000481744.5 | + | |transcript_name=ENST00000359326.9 ENST00000496973.5 ENST00000481744.5 ENST00000466580.6 ENST00000459772.5 NR_159440 NM_001320050 NM_001366771 NM_001366769 NM_001366768 NM_001320047 NM_001366773 NM_001366772 NM_001366770 AK303296 BC011012 AK001568 BC091516 AK310638 AK096493 AK299369 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6539.1 | |tss_id=hg_6539.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R922 B4DRP7 B4E0A9 Q9NSG2 | + | |uniprot_id=A0A024R922 A0A1B0GTJ9 A0A1B0GV14 B4DRP7 B4E0A9 Q9NSG2 |
}} | }} | ||
Revision as of 08:50, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 169795060 |
|---|---|
| End of the center position in the TSS region: | 169795061 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000359326.9 ENST00000496973.5 ENST00000481744.5 ENST00000466580.6 ENST00000459772.5 NR_159440 NM_001320050 NM_001366771 NM_001366769 NM_001366768 NM_001320047 NM_001366773 NM_001366772 NM_001366770 AK303296 BC011012 AK001568 BC091516 AK310638 AK096493 AK299369 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000359326.9:0 ENST00000496973.5:0 ENST00000481744.5:0 ENST00000466580.6:0 ENST00000459772.5:0 NR_159440:0 NM_001320050:0 NM_001366771:0 NM_001366769:0 NM_001366768:0 NM_001320047:0 NM_001366773:0 NM_001366772:0 NM_001366770:0 AK303296:0 BC011012:0 AK001568:0 BC091516:0 AK310638:0 AK096493:0 AK299369:0 EU832166:4 EU832260:4 NM_001363739:-24 NM_001320048:-24 ENST00000472795.5:-293 NM_001320051:-293 BC011445:-293 ENST00000286031.10:310 AL354614:310 LF320375:-318 MA555952:-318 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001366768 |
| Entrez ID: | 55732 |
| Nearest Unigene: | Hs.443551 |
| Nearest Refseq: | NM_018186 |
| Nearest Ensembl: | ENSG00000000460 |
| Gene Name: | chromosome 1 open reading frame 112 |
| Gene Alias: | - |
| Gene Description: | chromosome 1 open reading frame 112 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
