Difference between revisions of "TSS:Hg 233568.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-4601 | |distance_to_tss=-4601 | ||
|end=67620271 | |end=67620271 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=double C2 domain gamma pseudogene | + | |gene_description=double C2 domain gamma, pseudogene |
| − | |gene_name= | + | |gene_id=149281 |
| + | |gene_name=methyltransferase like 11B | ||
| + | |gene_source=HGNC:31932 | ||
| + | |gene_symbol=METTL11B | ||
| + | |gene_synonyms=HOMT1B | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:31932 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_033791 | |nearest_promoter_id=NR_033791 | ||
|nearest_refseq=NR_033791 | |nearest_refseq=NR_033791 | ||
|nearest_unigene=Hs.523838 | |nearest_unigene=Hs.523838 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=67620258 | |start=67620258 | ||
|start_of_center_position=170145958 | |start_of_center_position=170145958 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=49(GCTCTTAAGGCG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000439373.3 NM_001136107 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_233568.1 | |tss_id=hg_233568.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5VVY1 | ||
}} | }} | ||
Revision as of 12:50, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 170145958 |
|---|---|
| End of the center position in the TSS region: | 170145959 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000439373.3 NM_001136107 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88 |
TATA-Box annotation
| Distance to TSS: | -4601 |
|---|---|
| Nearest PromoterID: | NR_033791 |
| Entrez ID: | 390213 |
| Nearest Unigene: | Hs.523838 |
| Nearest Refseq: | NR_033791 |
| Nearest Ensembl: | |
| Gene Name: | methyltransferase like 11B |
| Gene Alias: | - |
| Gene Description: | double C2 domain gamma, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.065 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(GCTCTTAAGGCG,+,0.00) |
