Difference between revisions of "TSS:Hg 103226.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PHP= | |PHP= | ||
|PHP14= | |PHP14= | ||
| + | |all_trans=LF212876:335 MA448453:335 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=335 |
|distance_to_tss=-1474 | |distance_to_tss=-1474 | ||
|end=136847350 | |end=136847350 | ||
| Line 12: | Line 13: | ||
|entrez_id=29085 | |entrez_id=29085 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=CGI-202 | + | |gene_alias=CGI-202{{!}}HEL-S-132P{{!}}HSPC141{{!}}PHP{{!}}PHP14 |
|gene_description=phosphohistidine phosphatase 1 | |gene_description=phosphohistidine phosphatase 1 | ||
|gene_name=PHPT1 | |gene_name=PHPT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000054148 | |nearest_ensembl=ENSG00000054148 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_109807 |
|nearest_refseq=NM_014172 | |nearest_refseq=NM_014172 | ||
|nearest_unigene=Hs.409834 | |nearest_unigene=Hs.409834 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=136847333 | |start=136847333 | ||
|start_of_center_position=136847341 | |start_of_center_position=136847341 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF212876 MA448453 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103226.1 | |tss_id=hg_103226.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136847341 |
|---|---|
| End of the center position in the TSS region: | 136847342 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF212876 MA448453 |
|---|---|
| Distance: | 335 |
| Num_trans: | 2 |
| All_trans: | LF212876:335 MA448453:335 |
TATA-Box annotation
| Distance to TSS: | -1474 |
|---|---|
| Nearest PromoterID: | NR_109807 |
| Entrez ID: | 29085 |
| Nearest Unigene: | Hs.409834 |
| Nearest Refseq: | NM_014172 |
| Nearest Ensembl: | ENSG00000054148 |
| Gene Name: | PHPT1 |
| Gene Alias: | CGI-202|HEL-S-132P|HSPC141|PHP|PHP14 |
| Gene Description: | phosphohistidine phosphatase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
