Difference between revisions of "TSS:Hg 106679.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=10 |entrez_id=79803 |gc_percent=0.751244 |gene_alias=BLOC2S3 |gene_description="HPS6, biogenesis of lysosomal organelles comple...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000299238.6:0 NM_024747:0 uc001kuj.4:0 BC014993:0 AF536238:0 BC011594:0 KJ894735:43 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=10 | |distance_to_tss=10 | ||
| + | |end=102065431 | ||
|entrez_id=79803 | |entrez_id=79803 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=BLOC2S3 | |gene_alias=BLOC2S3 | ||
|gene_description="HPS6, biogenesis of lysosomal organelles complex 2 subunit 3" | |gene_description="HPS6, biogenesis of lysosomal organelles complex 2 subunit 3" | ||
| − | |gene_name=HPS6 | + | |gene_id=79803 |
| + | |gene_name="HPS6, biogenesis of lysosomal organelles complex 2 subunit 3" | ||
| + | |gene_source=HGNC:18817 | ||
| + | |gene_symbol=HPS6 | ||
| + | |gene_synonyms=BLOC2S3 FLJ22501 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18817 | ||
|nearest_ensembl=ENSG00000166189 | |nearest_ensembl=ENSG00000166189 | ||
|nearest_promoter_id=NM_024747 | |nearest_promoter_id=NM_024747 | ||
|nearest_refseq=NM_024747 | |nearest_refseq=NM_024747 | ||
|nearest_unigene=Hs.125133 | |nearest_unigene=Hs.125133 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=102065323 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000299238.6 NM_024747 uc001kuj.4 BC014993 AF536238 BC011594 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106679.1 | |tss_id=hg_106679.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q86YV9 | ||
}} | }} | ||
Revision as of 22:28, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000299238.6 NM_024747 uc001kuj.4 BC014993 AF536238 BC011594 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000299238.6:0 NM_024747:0 uc001kuj.4:0 BC014993:0 AF536238:0 BC011594:0 KJ894735:43 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_024747 |
| Entrez ID: | 79803 |
| Nearest Unigene: | Hs.125133 |
| Nearest Refseq: | NM_024747 |
| Nearest Ensembl: | ENSG00000166189 |
| Gene Name: | "HPS6, biogenesis of lysosomal organelles complex 2 subunit 3" |
| Gene Alias: | BLOC2S3 |
| Gene Description: | "HPS6, biogenesis of lysosomal organelles complex 2 subunit 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
