Difference between revisions of "TSS:Hg 223115.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NR_038428:2 ENST00000656741.1:-199 ENST00000668004.1:-234 ENST00000668035.1:-234 ENST00000457435.2:-274 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:27336 | |gene_source=HGNC:27336 | ||
|gene_symbol=LINC01546 | |gene_symbol=LINC01546 | ||
| − | |gene_synonyms= | + | |gene_synonyms=VAL |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:27336 | |hgnc_mgi_id=HGNC:27336 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_038428 | |nearest_refseq=NR_038428 | ||
|nearest_unigene=Hs.187816 | |nearest_unigene=Hs.187816 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=3271817 | |start=3271817 | ||
|start_of_center_position=3271817 | |start_of_center_position=3271817 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_038428 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_223115.1 | |tss_id=hg_223115.1 | ||
Revision as of 08:54, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3271817 |
|---|---|
| End of the center position in the TSS region: | 3271818 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_038428 |
|---|---|
| Distance: | 2 |
| Num_trans: | 5 |
| All_trans: | NR_038428:2 ENST00000656741.1:-199 ENST00000668004.1:-234 ENST00000668035.1:-234 ENST00000457435.2:-274 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NR_038428 |
| Entrez ID: | 100129464 |
| Nearest Unigene: | Hs.187816 |
| Nearest Refseq: | NR_038428 |
| Nearest Ensembl: | ENSG00000228459 |
| Gene Name: | long intergenic non-protein coding RNA 1546 |
| Gene Alias: | CXorf28 |
| Gene Description: | long intergenic non-protein coding RNA 1546 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
