Difference between revisions of "TSS:Hg 100471.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=39 |entrez_id=360 |gc_percent=0.766169 |gene_alias=AQP-3|GIL |gene_description=aquaporin 3 (Gill blood group) |gene_name=AQP3 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GIL= | ||
| + | |all_trans=ENST00000493581.1:0 uc064spr.1:0 AK095363:0 AK292208:0 AK315760:0 AK303206:0 ENST00000463983.5:5 uc064spt.1:5 ENST00000297991.4:-9 uc003zsx.4:-9 AB001325:14 BC013566:20 NM_004925:-31 NM_001318144:-31 AJ493597:34 KJ890695:56 CR541991:57 BT007199:57 CR542025:57 ENST00000473153.1:78 uc064spu.1:78 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=33447602 | ||
|entrez_id=360 | |entrez_id=360 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=AQP-3|GIL | |gene_alias=AQP-3|GIL | ||
|gene_description=aquaporin 3 (Gill blood group) | |gene_description=aquaporin 3 (Gill blood group) | ||
| − | |gene_name=AQP3 | + | |gene_id=360 |
| + | |gene_name=aquaporin 3 (Gill blood group) | ||
| + | |gene_source=HGNC:636 | ||
| + | |gene_symbol=AQP3 | ||
| + | |gene_synonyms=GIL | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:636 | ||
|nearest_ensembl=ENSG00000165272 | |nearest_ensembl=ENSG00000165272 | ||
|nearest_promoter_id=NM_004925 | |nearest_promoter_id=NM_004925 | ||
|nearest_refseq=NM_004925 | |nearest_refseq=NM_004925 | ||
|nearest_unigene=Hs.234642 | |nearest_unigene=Hs.234642 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=33447586 | ||
| + | |strand=- | ||
|tata_box="-34(TCCTATAAAGGG,+,0.00),-34(TCCTATAAAGGG,-,0.00)" | |tata_box="-34(TCCTATAAAGGG,+,0.00),-34(TCCTATAAAGGG,-,0.00)" | ||
| + | |transcript_name=ENST00000493581.1 uc064spr.1 AK095363 AK292208 AK315760 AK303206 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100471.1 | |tss_id=hg_100471.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:09, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000493581.1 uc064spr.1 AK095363 AK292208 AK315760 AK303206 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000493581.1:0 uc064spr.1:0 AK095363:0 AK292208:0 AK315760:0 AK303206:0 ENST00000463983.5:5 uc064spt.1:5 ENST00000297991.4:-9 uc003zsx.4:-9 AB001325:14 BC013566:20 NM_004925:-31 NM_001318144:-31 AJ493597:34 KJ890695:56 CR541991:57 BT007199:57 CR542025:57 ENST00000473153.1:78 uc064spu.1:78 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_004925 |
| Entrez ID: | 360 |
| Nearest Unigene: | Hs.234642 |
| Nearest Refseq: | NM_004925 |
| Nearest Ensembl: | ENSG00000165272 |
| Gene Name: | aquaporin 3 (Gill blood group) |
| Gene Alias: | AQP-3 |
| Gene Description: | aquaporin 3 (Gill blood group) |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TCCTATAAAGGG,+,0.00),-34(TCCTATAAAGGG,-,0.00)" |
