Difference between revisions of "TSS:Hg 23482.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BX647645:0 AK096907:-13 AL831970:14 BX647845:57 AL832360:109 AL832382:162 AL832011:-264 AL832336:-305 AL831985:354 ENST00000295237.10 | + | |all_trans=BX647645:0 AK096907:-13 AL831970:14 BX647845:57 AL832360:109 AL832382:162 AL832011:-264 AL832336:-305 AL831985:354 ENST00000295237.10:-400 AL832452:-400 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=61713 |
|end=167249088 | |end=167249088 | ||
|end_of_center_position=167249085 | |end_of_center_position=167249085 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152381 | |nearest_refseq=NM_152381 | ||
|nearest_unigene=Hs.73680 | |nearest_unigene=Hs.73680 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=167249081 | |start=167249081 | ||
|start_of_center_position=167249084 | |start_of_center_position=167249084 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-90(CCTTATATGAGA,+,0.00) |
|transcript_name=BX647645 | |transcript_name=BX647645 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 13:19, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 167249084 |
|---|---|
| End of the center position in the TSS region: | 167249085 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX647645 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | BX647645:0 AK096907:-13 AL831970:14 BX647845:57 AL832360:109 AL832382:162 AL832011:-264 AL832336:-305 AL831985:354 ENST00000295237.10:-400 AL832452:-400 |
TATA-Box annotation
| Distance to TSS: | 61713 |
|---|---|
| Nearest PromoterID: | NM_001199145 |
| Entrez ID: | 129446 |
| Nearest Unigene: | Hs.73680 |
| Nearest Refseq: | NM_152381 |
| Nearest Ensembl: | ENSG00000163092 |
| Gene Name: | xin actin binding repeat containing 2 |
| Gene Alias: | CMYA3 |
| Gene Description: | xin actin binding repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.313433 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -90(CCTTATATGAGA,+,0.00) |
