Difference between revisions of "TSS:Hg 108795.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK292521:-13 NM_001290020:- | + | |all_trans=ENST00000673439.1:-13 AK292521:-13 NM_001290020:-48 HM005697:-199 AK001679:-199 BC085611:-201 ENST00000305242.10:-230 NM_018076:-230 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=-13 | |distance=-13 | ||
| − | |distance_to_tss= | + | |distance_to_tss=55 |
|end=27998849 | |end=27998849 | ||
|end_of_center_position=27998842 | |end_of_center_position=27998842 | ||
| Line 12: | Line 12: | ||
|gene_description=armadillo repeat containing 4 | |gene_description=armadillo repeat containing 4 | ||
|gene_id=55130 | |gene_id=55130 | ||
| − | |gene_name= | + | |gene_name=outer dynein arm docking complex subunit 2 |
|gene_source=HGNC:25583 | |gene_source=HGNC:25583 | ||
| − | |gene_symbol= | + | |gene_symbol=ODAD2 |
| − | |gene_synonyms=CILD23 DKFZP434P1735 FLJ10376 FLJ10817 | + | |gene_synonyms=CILD23 DKFZP434P1735 FLJ10376 FLJ10817 gudu |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25583 | |hgnc_mgi_id=HGNC:25583 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_018076 | |nearest_refseq=NM_018076 | ||
|nearest_unigene=Hs.127530 | |nearest_unigene=Hs.127530 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=27998834 | |start=27998834 | ||
|start_of_center_position=27998841 | |start_of_center_position=27998841 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK292521 | + | |transcript_name=ENST00000673439.1 AK292521 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_108795.1 | |tss_id=hg_108795.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A140VKF7 |
}} | }} | ||
Revision as of 19:32, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27998841 |
|---|---|
| End of the center position in the TSS region: | 27998842 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673439.1 AK292521 |
|---|---|
| Distance: | -13 |
| Num_trans: | 8 |
| All_trans: | ENST00000673439.1:-13 AK292521:-13 NM_001290020:-48 HM005697:-199 AK001679:-199 BC085611:-201 ENST00000305242.10:-230 NM_018076:-230 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_001290020 |
| Entrez ID: | 55130 |
| Nearest Unigene: | Hs.127530 |
| Nearest Refseq: | NM_018076 |
| Nearest Ensembl: | ENSG00000169126 |
| Gene Name: | outer dynein arm docking complex subunit 2 |
| Gene Alias: | CILD23 |
| Gene Description: | armadillo repeat containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
