Difference between revisions of "TSS:Hg 104669.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ICER= | |ICER= | ||
| − | |all_trans=ENST00000354759.7 | + | |all_trans=NM_181571:17 ENST00000354759.7:-36 D14825:-36 ENST00000496019.5:-42 ENST00000460270.5:-81 ENST00000469949.6:-96 ENST00000429130.7:-107 ENST00000495960.5:-135 ENST00000482633.5:-150 NM_001267563:-197 NM_001267562:-197 NM_001352467:-197 NM_001352466:-197 NM_001352465:-197 NM_183013:-197 ENST00000466251.5:-209 ENST00000489321.5:214 BC017117:-221 ENST00000490460.5:-239 ENST00000427847.6:247 ENST00000374728.7:247 NM_183060:247 ENST00000461968.5:-250 ENST00000345491.7:250 BC041810:250 ENST00000487132.5:267 ENST00000374726.7:-275 BC066342:-275 ENST00000489388.5:-292 ENST00000482646.5:-325 ENST00000496626.5:-357 NM_001881:-357 ENST00000374721.7:-388 ENST00000474362.5:-407 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=17 |
| − | |distance_to_tss=- | + | |distance_to_tss=-23 |
|end=35127210 | |end=35127210 | ||
|end_of_center_position=35127204 | |end_of_center_position=35127204 | ||
|entrez_id=1390 | |entrez_id=1390 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=CREM-2 | + | |gene_alias=CREM-2{{!}}ICER{{!}}hCREM-2 |
|gene_description=cAMP responsive element modulator | |gene_description=cAMP responsive element modulator | ||
|gene_id=1390 | |gene_id=1390 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2352 | |hgnc_mgi_id=HGNC:2352 | ||
|nearest_ensembl=ENSG00000095794 | |nearest_ensembl=ENSG00000095794 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_181571 |
|nearest_refseq=NM_001881 | |nearest_refseq=NM_001881 | ||
|nearest_unigene=Hs.200250 | |nearest_unigene=Hs.200250 | ||
| − | |num_trans= | + | |num_trans=34 |
|species=human | |species=human | ||
|start=35127197 | |start=35127197 | ||
|start_of_center_position=35127203 | |start_of_center_position=35127203 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_181571 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104669.1 | |tss_id=hg_104669.1 | ||
Revision as of 17:56, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35127203 |
|---|---|
| End of the center position in the TSS region: | 35127204 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_181571 |
|---|---|
| Distance: | 17 |
| Num_trans: | 34 |
| All_trans: | NM_181571:17 ENST00000354759.7:-36 D14825:-36 ENST00000496019.5:-42 ENST00000460270.5:-81 ENST00000469949.6:-96 ENST00000429130.7:-107 ENST00000495960.5:-135 ENST00000482633.5:-150 NM_001267563:-197 NM_001267562:-197 NM_001352467:-197 NM_001352466:-197 NM_001352465:-197 NM_183013:-197 ENST00000466251.5:-209 ENST00000489321.5:214 BC017117:-221 ENST00000490460.5:-239 ENST00000427847.6:247 ENST00000374728.7:247 NM_183060:247 ENST00000461968.5:-250 ENST00000345491.7:250 BC041810:250 ENST00000487132.5:267 ENST00000374726.7:-275 BC066342:-275 ENST00000489388.5:-292 ENST00000482646.5:-325 ENST00000496626.5:-357 NM_001881:-357 ENST00000374721.7:-388 ENST00000474362.5:-407 |
TATA-Box annotation
| Distance to TSS: | -23 |
|---|---|
| Nearest PromoterID: | NM_181571 |
| Entrez ID: | 1390 |
| Nearest Unigene: | Hs.200250 |
| Nearest Refseq: | NM_001881 |
| Nearest Ensembl: | ENSG00000095794 |
| Gene Name: | cAMP responsive element modulator |
| Gene Alias: | CREM-2|ICER|hCREM-2 |
| Gene Description: | cAMP responsive element modulator |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
