Difference between revisions of "TSS:Hg 105001.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TCF6L2= | |TCF6L2= | ||
|TCF6L3= | |TCF6L3= | ||
| − | |all_trans=ENST00000373895.7:0 | + | |all_trans=ENST00000487519.6:0 ENST00000373895.7:0 NM_003201:0 AK312558:0 M62810:0 BC018628:0 BC104482:0 BC126366:14 ENST00000373899.3:-51 BC029815:-51 EU279428:74 HQ258758:96 KJ897655:96 AB451366:102 AB464302:102 CR407653:102 BT019658:102 BT019659:102 AB451241:102 ENST00000395377.2:158 NM_001270782:-253 NR_073073:-253 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=11 |
|end=58385446 | |end=58385446 | ||
|end_of_center_position=58385421 | |end_of_center_position=58385421 | ||
|entrez_id=7019 | |entrez_id=7019 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=MTDPS15 | + | |gene_alias=MTDPS15{{!}}MTTF1{{!}}MTTFA{{!}}TCF6{{!}}TCF6L1{{!}}TCF6L2{{!}}TCF6L3 |
| − | |gene_description= | + | |gene_description=transcription factor A, mitochondrial |
|gene_id=7019 | |gene_id=7019 | ||
| − | |gene_name= | + | |gene_name=transcription factor A, mitochondrial |
|gene_source=HGNC:11741 | |gene_source=HGNC:11741 | ||
|gene_symbol=TFAM | |gene_symbol=TFAM | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:11741 | |hgnc_mgi_id=HGNC:11741 | ||
|nearest_ensembl=ENSG00000108064 | |nearest_ensembl=ENSG00000108064 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003201 |
|nearest_refseq=NM_003201 | |nearest_refseq=NM_003201 | ||
|nearest_unigene=Hs.594250 | |nearest_unigene=Hs.594250 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=58385395 | |start=58385395 | ||
|start_of_center_position=58385420 | |start_of_center_position=58385420 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000373895.7 | + | |transcript_name=ENST00000487519.6 ENST00000373895.7 NM_003201 AK312558 M62810 BC018628 BC104482 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105001.1 | |tss_id=hg_105001.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q00059 Q05D31 Q3SX57 | + | |uniprot_id=E5KSU5 Q00059 Q05D31 Q3SX57 |
}} | }} | ||
Revision as of 18:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58385420 |
|---|---|
| End of the center position in the TSS region: | 58385421 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000487519.6 ENST00000373895.7 NM_003201 AK312558 M62810 BC018628 BC104482 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000487519.6:0 ENST00000373895.7:0 NM_003201:0 AK312558:0 M62810:0 BC018628:0 BC104482:0 BC126366:14 ENST00000373899.3:-51 BC029815:-51 EU279428:74 HQ258758:96 KJ897655:96 AB451366:102 AB464302:102 CR407653:102 BT019658:102 BT019659:102 AB451241:102 ENST00000395377.2:158 NM_001270782:-253 NR_073073:-253 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_003201 |
| Entrez ID: | 7019 |
| Nearest Unigene: | Hs.594250 |
| Nearest Refseq: | NM_003201 |
| Nearest Ensembl: | ENSG00000108064 |
| Gene Name: | transcription factor A, mitochondrial |
| Gene Alias: | MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 |
| Gene Description: | transcription factor A, mitochondrial |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
