Difference between revisions of "TSS:Hg 105519.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=KJ903964:10 | + | |all_trans=HQ258178:10 KJ903964:10 ENST00000334011.10:-42 NR_130125:-42 NM_152635:-42 AY013707:-56 AY358339:-178 ENST00000622652.1:-197 BC126440:-197 AK096435:-200 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=10 | |distance=10 | ||
| − | |distance_to_tss= | + | |distance_to_tss=46 |
|end=72893789 | |end=72893789 | ||
|end_of_center_position=72893785 | |end_of_center_position=72893785 | ||
| Line 17: | Line 17: | ||
|nearest_refseq=NM_152635 | |nearest_refseq=NM_152635 | ||
|nearest_unigene=Hs.8366 | |nearest_unigene=Hs.8366 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=72893780 | |start=72893780 | ||
|start_of_center_position=72893784 | |start_of_center_position=72893784 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-80(GGCCTTAAAAAA,-,0.00) |
| − | |transcript_name=KJ903964 | + | |transcript_name=HQ258178 KJ903964 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105519.1 | |tss_id=hg_105519.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:16, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 72893784 |
|---|---|
| End of the center position in the TSS region: | 72893785 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | HQ258178 KJ903964 |
|---|---|
| Distance: | 10 |
| Num_trans: | 10 |
| All_trans: | HQ258178:10 KJ903964:10 ENST00000334011.10:-42 NR_130125:-42 NM_152635:-42 AY013707:-56 AY358339:-178 ENST00000622652.1:-197 BC126440:-197 AK096435:-200 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NR_130125 |
| Entrez ID: | 170392 |
| Nearest Unigene: | Hs.8366 |
| Nearest Refseq: | NM_152635 |
| Nearest Ensembl: | ENSG00000138315 |
| Gene Name: | OIT3 |
| Gene Alias: | LZP |
| Gene Description: | oncoprotein induced transcript 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(GGCCTTAAAAAA,-,0.00) |
