Difference between revisions of "TSS:Hg 105616.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SMSr= | |SMSr= | ||
| − | |all_trans=DQ599338:-307 AB587437:-411 BC140219:-411 BC146556:-411 | + | |all_trans=LF333478:-52 MA569055:-52 LF333479:73 MA569056:73 DQ599338:-307 AB587437:-411 BC140219:-411 BC146556:-411 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance=- | + | |distance=-52 |
| − | |distance_to_tss= | + | |distance_to_tss=39300 |
|end=75150973 | |end=75150973 | ||
|end_of_center_position=75150957 | |end_of_center_position=75150957 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=HEL-177 | + | |gene_alias=HEL-177{{!}}SMSr |
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
|gene_name=SAMD8 | |gene_name=SAMD8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174156 |
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=75150939 | |start=75150939 | ||
|start_of_center_position=75150956 | |start_of_center_position=75150956 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=47(GTTTTTATAGTA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF333478 MA569055 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105616.1 | |tss_id=hg_105616.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75150956 |
|---|---|
| End of the center position in the TSS region: | 75150957 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF333478 MA569055 |
|---|---|
| Distance: | -52 |
| Num_trans: | 8 |
| All_trans: | LF333478:-52 MA569055:-52 LF333479:73 MA569056:73 DQ599338:-307 AB587437:-411 BC140219:-411 BC146556:-411 |
TATA-Box annotation
| Distance to TSS: | 39300 |
|---|---|
| Nearest PromoterID: | NM_001174156 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | SAMD8 |
| Gene Alias: | HEL-177|SMSr |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 47(GTTTTTATAGTA,+,0.00) |
