Difference between revisions of "TSS:Hg 105842.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK309980:0 ENST00000372273.7 | + | |all_trans=AK309980:0 ENST00000372273.7:-7 AL832483:-7 NM_001270369:-20 NM_001270368:-20 NM_001270367:-20 AK300490:-30 NR_072984:156 NR_072985:156 NR_072986:156 NR_072987:156 NM_001270374:156 ENST00000467529.5:181 AL832397:181 ENST00000463029.5:184 AK310160:191 AK311563:191 BX537803:192 ENST00000476173.5:206 ENST00000483732.5:239 CR457310:-343 KJ894792:-345 ENST00000372274.5:-351 ENST00000372275.5:-361 AK023325:-373 BC022252:-373 ENST00000372281.8:-378 NM_025125:-378 AK222536:-378 ENST00000372277.7:-397 ENST00000472622.5:-397 ENST00000613758.4:-397 NM_001270371:-397 NM_001270370:-397 NM_001270373:-397 NM_001270372:-397 |
|bA369J21.6= | |bA369J21.6= | ||
|chr=chr10 | |chr=chr10 | ||
| Line 10: | Line 10: | ||
|entrez_id=80195 | |entrez_id=80195 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=C10orf57 | + | |gene_alias=C10orf57{{!}}bA369J21.6 |
|gene_description=transmembrane protein 254 | |gene_description=transmembrane protein 254 | ||
|gene_id=80195 | |gene_id=80195 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:25804 | |hgnc_mgi_id=HGNC:25804 | ||
|nearest_ensembl=ENSG00000133678 | |nearest_ensembl=ENSG00000133678 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001270367 |
|nearest_refseq=NM_025125 | |nearest_refseq=NM_025125 | ||
|nearest_unigene=Hs.169982 | |nearest_unigene=Hs.169982 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=80079042 | |start=80079042 | ||
|start_of_center_position=80079065 | |start_of_center_position=80079065 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-46(TCTTATATGGGG,+,0.00) |
|transcript_name=AK309980 | |transcript_name=AK309980 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 18:23, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 80079065 |
|---|---|
| End of the center position in the TSS region: | 80079066 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK309980 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | AK309980:0 ENST00000372273.7:-7 AL832483:-7 NM_001270369:-20 NM_001270368:-20 NM_001270367:-20 AK300490:-30 NR_072984:156 NR_072985:156 NR_072986:156 NR_072987:156 NM_001270374:156 ENST00000467529.5:181 AL832397:181 ENST00000463029.5:184 AK310160:191 AK311563:191 BX537803:192 ENST00000476173.5:206 ENST00000483732.5:239 CR457310:-343 KJ894792:-345 ENST00000372274.5:-351 ENST00000372275.5:-361 AK023325:-373 BC022252:-373 ENST00000372281.8:-378 NM_025125:-378 AK222536:-378 ENST00000372277.7:-397 ENST00000472622.5:-397 ENST00000613758.4:-397 NM_001270371:-397 NM_001270370:-397 NM_001270373:-397 NM_001270372:-397 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001270367 |
| Entrez ID: | 80195 |
| Nearest Unigene: | Hs.169982 |
| Nearest Refseq: | NM_025125 |
| Nearest Ensembl: | ENSG00000133678 |
| Gene Name: | transmembrane protein 254 |
| Gene Alias: | C10orf57|bA369J21.6 |
| Gene Description: | transmembrane protein 254 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(TCTTATATGGGG,+,0.00) |
