Difference between revisions of "TSS:Hg 220123.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PAMM= | |PAMM= | ||
| − | |all_trans=ENST00000372188.5:80 NM_001243779 | + | |all_trans=ENST00000372188.5:80 NM_001243779:80 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 10: | Line 10: | ||
|entrez_id=84293 | |entrez_id=84293 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=C10orf58 | + | |gene_alias=Adrx{{!}}C10orf58{{!}}FAM213A{{!}}PAMM |
| − | |gene_description= | + | |gene_description=peroxiredoxin like 2A |
|gene_id=84293 | |gene_id=84293 | ||
| − | |gene_name= | + | |gene_name=peroxiredoxin like 2A |
|gene_source=HGNC:28651 | |gene_source=HGNC:28651 | ||
| − | |gene_symbol= | + | |gene_symbol=PRXL2A |
| − | |gene_synonyms=MGC4248 PAMM | + | |gene_synonyms=Adrx MGC4248 PAMM |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28651 | |hgnc_mgi_id=HGNC:28651 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_032333 | |nearest_refseq=NM_032333 | ||
|nearest_unigene=Hs.500333 | |nearest_unigene=Hs.500333 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=80407748 | |start=80407748 | ||
|start_of_center_position=80407748 | |start_of_center_position=80407748 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-92(TTTTTTAAAGAC,+,0.00) |
| − | |transcript_name=ENST00000372188.5 NM_001243779 | + | |transcript_name=ENST00000372188.5 NM_001243779 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_220123.1 | |tss_id=hg_220123.1 | ||
Revision as of 08:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80407748 |
|---|---|
| End of the center position in the TSS region: | 80407749 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372188.5 NM_001243779 |
|---|---|
| Distance: | 80 |
| Num_trans: | 2 |
| All_trans: | ENST00000372188.5:80 NM_001243779:80 |
TATA-Box annotation
| Distance to TSS: | -80 |
|---|---|
| Nearest PromoterID: | NM_001243779 |
| Entrez ID: | 84293 |
| Nearest Unigene: | Hs.500333 |
| Nearest Refseq: | NM_032333 |
| Nearest Ensembl: | ENSG00000122378 |
| Gene Name: | peroxiredoxin like 2A |
| Gene Alias: | Adrx|C10orf58|FAM213A|PAMM |
| Gene Description: | peroxiredoxin like 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -92(TTTTTTAAAGAC,+,0.00) |
