Difference between revisions of "TSS:Hg 105868.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TM4SF14= | |TM4SF14= | ||
| − | |all_trans=ENST00000429989.7:7 | + | |all_trans=ENST00000429989.7:7 LF210016:90 MA445593:90 ENST00000481124.5:106 BC093016:123 ENST00000372158.6:151 NM_001351267:151 NM_030927:151 NM_001351266:151 NM_001351268:151 NM_001128309:151 AK295321:152 AL136638:152 AK074558:152 AF311903:158 ENST00000372157.6:163 ENST00000469149.1:170 ENST00000372164.7:171 BC002920:177 ENST00000341863.10:196 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=7 | |distance=7 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-111 |
|end=80454159 | |end=80454159 | ||
|end_of_center_position=80454154 | |end_of_center_position=80454154 | ||
|entrez_id=81619 | |entrez_id=81619 | ||
|gc_percent=0.870647 | |gc_percent=0.870647 | ||
| − | |gene_alias=DC-TM4F2 | + | |gene_alias=DC-TM4F2{{!}}TM4SF14{{!}}tspan-14 |
|gene_description=tetraspanin 14 | |gene_description=tetraspanin 14 | ||
|gene_id=81619 | |gene_id=81619 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23303 | |hgnc_mgi_id=HGNC:23303 | ||
|nearest_ensembl=ENSG00000108219 | |nearest_ensembl=ENSG00000108219 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351266 |
|nearest_refseq=NM_030927 | |nearest_refseq=NM_030927 | ||
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.308615 |
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=80454148 | |start=80454148 | ||
|start_of_center_position=80454153 | |start_of_center_position=80454153 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000429989.7 | + | |transcript_name=ENST00000429989.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105868.1 | |tss_id=hg_105868.1 | ||
Revision as of 18:24, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 80454153 |
|---|---|
| End of the center position in the TSS region: | 80454154 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429989.7 |
|---|---|
| Distance: | 7 |
| Num_trans: | 20 |
| All_trans: | ENST00000429989.7:7 LF210016:90 MA445593:90 ENST00000481124.5:106 BC093016:123 ENST00000372158.6:151 NM_001351267:151 NM_030927:151 NM_001351266:151 NM_001351268:151 NM_001128309:151 AK295321:152 AL136638:152 AK074558:152 AF311903:158 ENST00000372157.6:163 ENST00000469149.1:170 ENST00000372164.7:171 BC002920:177 ENST00000341863.10:196 |
TATA-Box annotation
| Distance to TSS: | -111 |
|---|---|
| Nearest PromoterID: | NM_001351266 |
| Entrez ID: | 81619 |
| Nearest Unigene: | Hs.308615 |
| Nearest Refseq: | NM_030927 |
| Nearest Ensembl: | ENSG00000108219 |
| Gene Name: | tetraspanin 14 |
| Gene Alias: | DC-TM4F2|TM4SF14|tspan-14 |
| Gene Description: | tetraspanin 14 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.870647 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
