Difference between revisions of "TSS:Hg 106026.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BCYM4= | |BCYM4= | ||
|SK2= | |SK2= | ||
| − | |all_trans=AF074331:0 AF091242:-10 AF150754:-10 AF173365:13 AK312556:-33 BC009894:-40 DQ893625:56 DQ895430:56 KR710243:59 KR710244 | + | |all_trans=AF074331:0 AF091242:-10 AF150754:-10 AF173365:13 ENST00000456849.2:-33 NM_004670:-33 NM_001015880:-33 AK312556:-33 BC009894:-40 GQ891452:-40 DQ893625:56 DQ895430:56 KJ905366:59 KR710243:59 KR710244:59 AF313907:61 ENST00000361175.8:-298 ENST00000465996.5:436 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=38 |
|end=87659921 | |end=87659921 | ||
|end_of_center_position=87659916 | |end_of_center_position=87659916 | ||
|entrez_id=9060 | |entrez_id=9060 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=ATPSK2 | + | |gene_alias=ATPSK2{{!}}BCYM4{{!}}SK2 |
|gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | |gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
|gene_id=9060 | |gene_id=9060 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:8604 | |hgnc_mgi_id=HGNC:8604 | ||
|nearest_ensembl=ENSG00000198682 | |nearest_ensembl=ENSG00000198682 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004670 |
|nearest_refseq=NM_004670 | |nearest_refseq=NM_004670 | ||
|nearest_unigene=Hs.524491 | |nearest_unigene=Hs.524491 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=87659910 | |start=87659910 | ||
|start_of_center_position=87659915 | |start_of_center_position=87659915 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-68(CTTTTTATACCT,+,0.00) |
|transcript_name=AF074331 | |transcript_name=AF074331 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 18:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87659915 |
|---|---|
| End of the center position in the TSS region: | 87659916 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF074331 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | AF074331:0 AF091242:-10 AF150754:-10 AF173365:13 ENST00000456849.2:-33 NM_004670:-33 NM_001015880:-33 AK312556:-33 BC009894:-40 GQ891452:-40 DQ893625:56 DQ895430:56 KJ905366:59 KR710243:59 KR710244:59 AF313907:61 ENST00000361175.8:-298 ENST00000465996.5:436 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_004670 |
| Entrez ID: | 9060 |
| Nearest Unigene: | Hs.524491 |
| Nearest Refseq: | NM_004670 |
| Nearest Ensembl: | ENSG00000198682 |
| Gene Name: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Alias: | ATPSK2|BCYM4|SK2 |
| Gene Description: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -68(CTTTTTATACCT,+,0.00) |
