Difference between revisions of "TSS:Hg 106160.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MPP-1= | |MPP-1= | ||
|MPP1= | |MPP1= | ||
| − | |all_trans=ENST00000447580 | + | |all_trans=ENST00000447580.1:12 AK074336:-17 BC042130:-19 BC046134:-20 AB033337:-20 BC093089:-22 AL117496:-22 BC058913:-23 BC108688:-29 BC012585:-40 AY282406:-44 ENST00000260753.8:-47 AK290439:-47 ENST00000371728.8:-67 NR_168374:-67 NM_001382506:-67 NM_016195:-67 NM_001284259:-67 NR_168375:-67 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 13: | Line 13: | ||
|entrez_id=9585 | |entrez_id=9585 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=CT90 | + | |gene_alias=CT90{{!}}KRMP1{{!}}MPHOSPH1{{!}}MPP-1{{!}}MPP1 |
|gene_description=kinesin family member 20B | |gene_description=kinesin family member 20B | ||
|gene_id=9585 | |gene_id=9585 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:7212 | |hgnc_mgi_id=HGNC:7212 | ||
|nearest_ensembl=ENSG00000138182 | |nearest_ensembl=ENSG00000138182 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284259 |
|nearest_refseq=NM_016195 | |nearest_refseq=NM_016195 | ||
|nearest_unigene=Hs.240 | |nearest_unigene=Hs.240 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=89701661 | |start_of_center_position=89701661 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000447580 | + | |transcript_name=ENST00000447580.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106160.1 | |tss_id=hg_106160.1 | ||
Revision as of 18:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89701661 |
|---|---|
| End of the center position in the TSS region: | 89701662 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000447580.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 19 |
| All_trans: | ENST00000447580.1:12 AK074336:-17 BC042130:-19 BC046134:-20 AB033337:-20 BC093089:-22 AL117496:-22 BC058913:-23 BC108688:-29 BC012585:-40 AY282406:-44 ENST00000260753.8:-47 AK290439:-47 ENST00000371728.8:-67 NR_168374:-67 NM_001382506:-67 NM_016195:-67 NM_001284259:-67 NR_168375:-67 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001284259 |
| Entrez ID: | 9585 |
| Nearest Unigene: | Hs.240 |
| Nearest Refseq: | NM_016195 |
| Nearest Ensembl: | ENSG00000138182 |
| Gene Name: | kinesin family member 20B |
| Gene Alias: | CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 |
| Gene Description: | kinesin family member 20B |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
