Difference between revisions of "TSS:Hg 106377.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000539666.5:48 ENST00000478086.5:48 ENST00000624776.3:48 NM_001278525:48 NM_001330732:48 AK095317:48 BC030967:48 ENST00000563195.1:64 BC109046:-94 BC109045:-99 LF345592:123 MA581169:123 ENST00000488700.5:-263 NM_001330738:272 NM_001330737:272 NM_001330736:272 NM_001330735:272 NM_001330733:272 ENST00000316045.9:-283 NM_001278524:-283 NM_001278526:-283 NR_138482:-283 NM_014803:-283 CR627437:-283 LF211320:-426 MA446897:-426 LF345593:462 MA581170:462 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=48 |
|distance_to_tss=-53 | |distance_to_tss=-53 | ||
|end=96130008 | |end=96130008 | ||
| Line 11: | Line 11: | ||
|gene_alias=ZNF518 | |gene_alias=ZNF518 | ||
|gene_description=zinc finger protein 518A | |gene_description=zinc finger protein 518A | ||
| − | |gene_name=ZNF518A | + | |gene_id=9849 |
| + | |gene_name=zinc finger protein 518A | ||
| + | |gene_source=HGNC:29009 | ||
| + | |gene_symbol=ZNF518A | ||
| + | |gene_synonyms=KIAA0335 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330732 |
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=96129997 | |start=96129997 | ||
|start_of_center_position=96130002 | |start_of_center_position=96130002 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 NM_001330732 AK095317 BC030967 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106377.1 | |tss_id=hg_106377.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A087WWK1 Q6AHZ1 | ||
}} | }} | ||
Revision as of 18:36, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 96130002 |
|---|---|
| End of the center position in the TSS region: | 96130003 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 NM_001330732 AK095317 BC030967 |
|---|---|
| Distance: | 48 |
| Num_trans: | 28 |
| All_trans: | ENST00000539666.5:48 ENST00000478086.5:48 ENST00000624776.3:48 NM_001278525:48 NM_001330732:48 AK095317:48 BC030967:48 ENST00000563195.1:64 BC109046:-94 BC109045:-99 LF345592:123 MA581169:123 ENST00000488700.5:-263 NM_001330738:272 NM_001330737:272 NM_001330736:272 NM_001330735:272 NM_001330733:272 ENST00000316045.9:-283 NM_001278524:-283 NM_001278526:-283 NR_138482:-283 NM_014803:-283 CR627437:-283 LF211320:-426 MA446897:-426 LF345593:462 MA581170:462 |
TATA-Box annotation
| Distance to TSS: | -53 |
|---|---|
| Nearest PromoterID: | NM_001330732 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | zinc finger protein 518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
