Difference between revisions of "TSS:Hg 106519.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SCD1= | |SCD1= | ||
|SCDOS= | |SCDOS= | ||
| − | |all_trans= | + | |all_trans=AB032261:452 BC062303:457 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=452 |
| − | |distance_to_tss=- | + | |distance_to_tss=-583 |
|end=100346672 | |end=100346672 | ||
|end_of_center_position=100346650 | |end_of_center_position=100346650 | ||
|entrez_id=6319 | |entrez_id=6319 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=FADS5 | + | |gene_alias=FADS5{{!}}MSTP008{{!}}SCD1{{!}}SCDOS{{!}}hSCD1 |
|gene_description=stearoyl-CoA desaturase | |gene_description=stearoyl-CoA desaturase | ||
|gene_id=6319 | |gene_id=6319 | ||
| − | |gene_name=stearoyl-CoA desaturase | + | |gene_name=stearoyl-CoA desaturase |
|gene_source=HGNC:10571 | |gene_source=HGNC:10571 | ||
|gene_symbol=SCD | |gene_symbol=SCD | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005063 | |nearest_refseq=NM_005063 | ||
|nearest_unigene=Hs.558396 | |nearest_unigene=Hs.558396 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=100346627 | |start=100346627 | ||
|start_of_center_position=100346649 | |start_of_center_position=100346649 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB032261 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106519.1 | |tss_id=hg_106519.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 100346649 |
|---|---|
| End of the center position in the TSS region: | 100346650 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB032261 |
|---|---|
| Distance: | 452 |
| Num_trans: | 2 |
| All_trans: | AB032261:452 BC062303:457 |
TATA-Box annotation
| Distance to TSS: | -583 |
|---|---|
| Nearest PromoterID: | NM_005063 |
| Entrez ID: | 6319 |
| Nearest Unigene: | Hs.558396 |
| Nearest Refseq: | NM_005063 |
| Nearest Ensembl: | ENSG00000099194 |
| Gene Name: | stearoyl-CoA desaturase |
| Gene Alias: | FADS5|MSTP008|SCD1|SCDOS|hSCD1 |
| Gene Description: | stearoyl-CoA desaturase |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
