Difference between revisions of "TSS:Hg 107311.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC018116:-20 ENST00000392870.3:-38 NM_005308:-38 BC064506:63 L15388:69 AK309761:75 AK313012:216 AB590773:296 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=-20 | |distance=-20 | ||
| − | |distance_to_tss= | + | |distance_to_tss=44 |
|end=119207622 | |end=119207622 | ||
|end_of_center_position=119207616 | |end_of_center_position=119207616 | ||
|entrez_id=2869 | |entrez_id=2869 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=GPRK5 | + | |gene_alias=FP2025{{!}}GPRK5 |
|gene_description=G protein-coupled receptor kinase 5 | |gene_description=G protein-coupled receptor kinase 5 | ||
|gene_id=2869 | |gene_id=2869 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_005308 | |nearest_refseq=NM_005308 | ||
|nearest_unigene=Hs.524625 | |nearest_unigene=Hs.524625 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=119207608 | |start=119207608 | ||
|start_of_center_position=119207615 | |start_of_center_position=119207615 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(AGGCATTAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC018116 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_107311.1 | |tss_id=hg_107311.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:58, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119207615 |
|---|---|
| End of the center position in the TSS region: | 119207616 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC018116 |
|---|---|
| Distance: | -20 |
| Num_trans: | 8 |
| All_trans: | BC018116:-20 ENST00000392870.3:-38 NM_005308:-38 BC064506:63 L15388:69 AK309761:75 AK313012:216 AB590773:296 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_005308 |
| Entrez ID: | 2869 |
| Nearest Unigene: | Hs.524625 |
| Nearest Refseq: | NM_005308 |
| Nearest Ensembl: | ENSG00000198873 |
| Gene Name: | G protein-coupled receptor kinase 5 |
| Gene Alias: | FP2025|GPRK5 |
| Gene Description: | G protein-coupled receptor kinase 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(AGGCATTAAAGC,-,0.00) |
