Difference between revisions of "TSS:Hg 232136.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000462373.1:-4 ENST00000470781.5:-23 D64015:-23 BC128140:-23 BC128141:-23 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-4 |
| − | |distance_to_tss= | + | |distance_to_tss=949 |
|end=119208520 | |end=119208520 | ||
|end_of_center_position=119593490 | |end_of_center_position=119593490 | ||
|entrez_id=2869 | |entrez_id=2869 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=GPRK5 | + | |gene_alias=FP2025{{!}}GPRK5 |
|gene_description=G protein-coupled receptor kinase 5 | |gene_description=G protein-coupled receptor kinase 5 | ||
| − | |gene_id= | + | |gene_id=7073 |
| − | |gene_name= | + | |gene_name=TIA1 cytotoxic granule associated RNA binding protein like 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:11804 |
| − | |gene_symbol= | + | |gene_symbol=TIAL1 |
| − | |gene_synonyms= | + | |gene_synonyms=TIAR |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:11804 |
|nearest_ensembl=ENSG00000198873 | |nearest_ensembl=ENSG00000198873 | ||
|nearest_promoter_id=NM_005308 | |nearest_promoter_id=NM_005308 | ||
|nearest_refseq=NM_005308 | |nearest_refseq=NM_005308 | ||
|nearest_unigene=Hs.524625 | |nearest_unigene=Hs.524625 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=119208519 | |start=119208519 | ||
|start_of_center_position=119593489 | |start_of_center_position=119593489 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(GCCTTTTAAAGG,-,0.00),-33(CCTTTTAAAGGC,+,0.00),-32(CTTTTAAAGGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000462373.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232136.1 | |tss_id=hg_232136.1 | ||
Revision as of 12:17, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119593489 |
|---|---|
| End of the center position in the TSS region: | 119593490 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000462373.1 |
|---|---|
| Distance: | -4 |
| Num_trans: | 5 |
| All_trans: | ENST00000462373.1:-4 ENST00000470781.5:-23 D64015:-23 BC128140:-23 BC128141:-23 |
TATA-Box annotation
| Distance to TSS: | 949 |
|---|---|
| Nearest PromoterID: | NM_005308 |
| Entrez ID: | 2869 |
| Nearest Unigene: | Hs.524625 |
| Nearest Refseq: | NM_005308 |
| Nearest Ensembl: | ENSG00000198873 |
| Gene Name: | TIA1 cytotoxic granule associated RNA binding protein like 1 |
| Gene Alias: | FP2025|GPRK5 |
| Gene Description: | G protein-coupled receptor kinase 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GCCTTTTAAAGG,-,0.00),-33(CCTTTTAAAGGC,+,0.00),-32(CTTTTAAAGGCA,+,0.00) |
