Difference between revisions of "TSS:Mm 99281.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PA28gamma= | |PA28gamma= | ||
|REGgamma= | |REGgamma= | ||
| − | |all_trans=ENSMUST00000142640.7:0 ENSMUST00000019470.13:0 NM_011192:0 | + | |all_trans=ENSMUST00000142640.7:0 ENSMUST00000019470.13:0 NM_011192:0 AK150939:0 AK140597:0 AK171348:0 BC015255:0 LF230675:0 MA466252:0 AK156079:7 BC139818:38 D87911:53 AK178475:161 AK179381:162 AK180194:162 CT010198:172 U60330:177 LF230672:-409 MA466249:-409 LF198891:-416 MA434468:-416 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=25 |
|end=101316275 | |end=101316275 | ||
|end_of_center_position=101316238 | |end_of_center_position=101316238 | ||
|entrez_id=19192 | |entrez_id=19192 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=AA410043 | + | |gene_alias=AA410043{{!}}AU020960{{!}}Ki{{!}}PA28gamma{{!}}REGgamma{{!}}pa28g |
| − | |gene_description= | + | |gene_description=proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) |
|gene_id=19192 | |gene_id=19192 | ||
| − | |gene_name= | + | |gene_name=proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) |
|gene_source=MGI:1096366 | |gene_source=MGI:1096366 | ||
|gene_symbol=Psme3 | |gene_symbol=Psme3 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_011192 | |nearest_refseq=NM_011192 | ||
|nearest_unigene=Mm.288477 | |nearest_unigene=Mm.288477 | ||
| − | |num_trans= | + | |num_trans=21 |
|pa28g= | |pa28g= | ||
|species=mouse | |species=mouse | ||
| Line 32: | Line 32: | ||
|start_of_center_position=101316237 | |start_of_center_position=101316237 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000142640.7 ENSMUST00000019470.13 NM_011192 | + | |transcript_name=ENSMUST00000142640.7 ENSMUST00000019470.13 NM_011192 AK150939 AK140597 AK171348 BC015255 LF230675 MA466252 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99281.1 | |tss_id=mm_99281.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2A4J3 | + | |uniprot_id=A2A4J3 Q4FK54 |
}} | }} | ||
Revision as of 03:48, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101316237 |
|---|---|
| End of the center position in the TSS region: | 101316238 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000142640.7 ENSMUST00000019470.13 NM_011192 AK150939 AK140597 AK171348 BC015255 LF230675 MA466252 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000142640.7:0 ENSMUST00000019470.13:0 NM_011192:0 AK150939:0 AK140597:0 AK171348:0 BC015255:0 LF230675:0 MA466252:0 AK156079:7 BC139818:38 D87911:53 AK178475:161 AK179381:162 AK180194:162 CT010198:172 U60330:177 LF230672:-409 MA466249:-409 LF198891:-416 MA434468:-416 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_011192 |
| Entrez ID: | 19192 |
| Nearest Unigene: | Mm.288477 |
| Nearest Refseq: | NM_011192 |
| Nearest Ensembl: | ENSMUSG00000078652 |
| Gene Name: | proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) |
| Gene Alias: | AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g |
| Gene Description: | proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
