Difference between revisions of "TSS:Hg 107444.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AK314660:54 ENST00000494222.5:59 ENST00000368990.7:59 BC001136:67 NM_001377249:71 NM_001377250:71 NM_001377235:71 NM_001377234:71 NM_001377232:71 NM_001377231:71 NM_001377242:71 NM_001377248:71 NM_001377247:71 NM_001377246:71 NM_001377245:71 NM_001377244:71 NM_001377243:71 NM_001001974:71 NM_001377241:71 NM_001377240:71 NM_001377258:71 NM_001377257:71 NM_001377256:71 NM_001377255:71 NM_001377254:71 NM_001377253:71 NM_001377252:71 NM_001377251:71 NM_001330178:71 NM_001377238:71 NM_001377237:71 NM_001377230:71 NM_021622:71 NR_165160:71 NR_165161:71 NR_165162:71 NR_165164:71 NR_165165:71 ENST00000368989.6:123 ENST00000463663.6:197 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=54 |
| − | |distance_to_tss= | + | |distance_to_tss=-79 |
|end=122374637 | |end=122374637 | ||
|end_of_center_position=122374629 | |end_of_center_position=122374629 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_021622 | |nearest_refseq=NM_021622 | ||
|nearest_unigene=Hs.643512 | |nearest_unigene=Hs.643512 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=122374620 | |start=122374620 | ||
|start_of_center_position=122374628 | |start_of_center_position=122374628 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK314660 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_107444.1 | |tss_id=hg_107444.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B2RBH1 |
}} | }} | ||
Revision as of 19:01, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 122374628 |
|---|---|
| End of the center position in the TSS region: | 122374629 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK314660 |
|---|---|
| Distance: | 54 |
| Num_trans: | 40 |
| All_trans: | AK314660:54 ENST00000494222.5:59 ENST00000368990.7:59 BC001136:67 NM_001377249:71 NM_001377250:71 NM_001377235:71 NM_001377234:71 NM_001377232:71 NM_001377231:71 NM_001377242:71 NM_001377248:71 NM_001377247:71 NM_001377246:71 NM_001377245:71 NM_001377244:71 NM_001377243:71 NM_001001974:71 NM_001377241:71 NM_001377240:71 NM_001377258:71 NM_001377257:71 NM_001377256:71 NM_001377255:71 NM_001377254:71 NM_001377253:71 NM_001377252:71 NM_001377251:71 NM_001330178:71 NM_001377238:71 NM_001377237:71 NM_001377230:71 NM_021622:71 NR_165160:71 NR_165161:71 NR_165162:71 NR_165164:71 NR_165165:71 ENST00000368989.6:123 ENST00000463663.6:197 |
TATA-Box annotation
| Distance to TSS: | -79 |
|---|---|
| Nearest PromoterID: | NM_001330178 |
| Entrez ID: | 59338 |
| Nearest Unigene: | Hs.643512 |
| Nearest Refseq: | NM_021622 |
| Nearest Ensembl: | ENSG00000107679 |
| Gene Name: | pleckstrin homology domain containing A1 |
| Gene Alias: | TAPP1 |
| Gene Description: | pleckstrin homology domain containing A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
