Difference between revisions of "TSS:Mm 99405.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000133930.7:0 ENSMUST00000100392.4:0 NM_153544:0 | + | |all_trans=ENSMUST00000133930.7:0 ENSMUST00000100392.4:0 NM_153544:0 LF198916:0 MA434493:0 AK029811:0 BC030867:11 BC108338:13 BC085317:87 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 12: | Line 12: | ||
|gene_description=cDNA sequence BC030867 | |gene_description=cDNA sequence BC030867 | ||
|gene_id=217216 | |gene_id=217216 | ||
| − | |gene_name= | + | |gene_name=homologous recombination factor with OB-fold |
|gene_source=MGI:2387601 | |gene_source=MGI:2387601 | ||
| − | |gene_symbol= | + | |gene_symbol=Hrob |
| − | |gene_synonyms= | + | |gene_synonyms=BC030867 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2387601 | |hgnc_mgi_id=MGI:2387601 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=102248865 | |start_of_center_position=102248865 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00) |
| − | |transcript_name=ENSMUST00000133930.7 ENSMUST00000100392.4 NM_153544 | + | |transcript_name=ENSMUST00000133930.7 ENSMUST00000100392.4 NM_153544 LF198916 MA434493 AK029811 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99405.1 | |tss_id=mm_99405.1 | ||
Revision as of 03:50, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102248865 |
|---|---|
| End of the center position in the TSS region: | 102248866 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000133930.7 ENSMUST00000100392.4 NM_153544 LF198916 MA434493 AK029811 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000133930.7:0 ENSMUST00000100392.4:0 NM_153544:0 LF198916:0 MA434493:0 AK029811:0 BC030867:11 BC108338:13 BC085317:87 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_153544 |
| Entrez ID: | 217216 |
| Nearest Unigene: | Mm.247335 |
| Nearest Refseq: | NM_153544 |
| Nearest Ensembl: | ENSMUSG00000034773 |
| Gene Name: | homologous recombination factor with OB-fold |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC030867 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00) |
